Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3852 |
Symbol | |
ID | 4175632 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 4649149 |
End bp | 4649748 |
Gene Length | 600 bp |
Protein Length | 199 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638056880 |
Product | SH3, type 3 |
Protein accession | YP_663406 |
Protein GI | 109900151 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3103] SH3 domain protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000664747 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTAAAGC GATTTTTGTT CAGTGTTACC TGCGCCTTAT TTTTGTTGCC TTCCATACAG GCAAGTGCTC AACAATCTCA GGGCGAAACC CAGTATATTT CAGACGATTT ATTCACTTTT TTACATTCAG GCCCAGGTAG AAACTACCGT ATTCTAGGCT CAGTTGTGGC GGGCTCTGAA GTCACAGTGT TACAAACAGA CAGTGACAGT AATTATGTAG AGATCGTCGA TGATAAAGAC CGGACAGGTT GGGTCGACGG TGAATTTGTT AGTCCTCAAA AAAGTTTGCG TGAACTCGTC CCTGGCTTGC AGCAACAACT TGCCGATGCC ACACAGAGCA ATAACGCTCA ACAAGATGAG AACGACAGTT TACGACAGCA ATTTTCTGAG TTGCAGTCGC AAAATGACAG ACTGACGAAA CAACTTAAAA CCTTGGAACA GCAAAACGCT GATTTTAGTC AGAAATTGGA TGCGGCCGAC CAAACTGAAA AAATGCAGTG GTTTACCCGT GGCGGTATCG TGGCGCTTAT CAGCTTAATT CTAGGGGTTA TAGTCGCTTA TTTGCCCAAG AAACGACGCA AAAGTGATAC TTGGATGTAG
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Protein sequence | MLKRFLFSVT CALFLLPSIQ ASAQQSQGET QYISDDLFTF LHSGPGRNYR ILGSVVAGSE VTVLQTDSDS NYVEIVDDKD RTGWVDGEFV SPQKSLRELV PGLQQQLADA TQSNNAQQDE NDSLRQQFSE LQSQNDRLTK QLKTLEQQNA DFSQKLDAAD QTEKMQWFTR GGIVALISLI LGVIVAYLPK KRRKSDTWM
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