| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3742 |
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| Symbol | |
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| ID | 4175522 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4507262 |
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| End bp | 4507828 |
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| Gene Length | 567 bp |
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| Protein Length | 188 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638056772 |
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| Product | ECF subfamily RNA polymerase sigma-24 factor |
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| Protein accession | YP_663298 |
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| Protein GI | 109900043 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00162428 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | TTGACTGAGT ATTCGAACGT TGTTGCTGCT AAACATAAGT TTGCCACCGA TGAAGAGCGG
CAGCTACTGC TAGCAGTAAA AAATGGAAAC CGACAGGCAT ATCATCAGCT GTACCATCAA
TATATTGGTC AGGTATATGC TTTGTGCTAC CGGCTAACGG GAGATAAGGC GTTGGCAGAG
GATGCATCGC AAGAGGTCTT TATTCAATTA TGGCGGAAAA TAGGGGATTA CTCAGAGCAA
AGCAAGTTCT CGACATGGCT GCATACCGTG ACATCCCATA TTACGATTTC GTATATTCGT
AAGCAGCGTG GCTGGGTTCA GCGCATGTTT AATATAGAAG ACTCAAGCGC CGCAAACGAC
GTTGCTGAAC CTTCTGCCGG GGAAGTGGAT ATTGAAAAGT ACGTGACCCG CTTACCTGAG
CGCGCTCGTA TCGTTTTTGT ATTGCACGCC ATTGAGGGTT ATCGCCATGA AGAAATCGCG
CAAATGACCA ATATGGCAGT AGGAACAAGT AAGGCTCAAT TCCATCGAGC AAAGCAGTTA
TTAGAGGAGT GGATGGGGTA TGCATAA
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| Protein sequence | MTEYSNVVAA KHKFATDEER QLLLAVKNGN RQAYHQLYHQ YIGQVYALCY RLTGDKALAE
DASQEVFIQL WRKIGDYSEQ SKFSTWLHTV TSHITISYIR KQRGWVQRMF NIEDSSAAND
VAEPSAGEVD IEKYVTRLPE RARIVFVLHA IEGYRHEEIA QMTNMAVGTS KAQFHRAKQL
LEEWMGYA
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