| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3726 |
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| Symbol | |
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| ID | 4175506 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4489191 |
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| End bp | 4490510 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638056756 |
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| Product | xylose isomerase |
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| Protein accession | YP_663282 |
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| Protein GI | 109900027 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2115] Xylose isomerase |
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| TIGRFAM ID | [TIGR02630] xylose isomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.658908 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGAAT ATTTTAAAGA TATCCCTAAA GTAAAATTTG AAGGTACCAG TTCAGACAAC
CCATTAGCAT TTCGCCATTA CAACCCAGAA GAACTGGTGC TAGGCAAGAG CATGAAAGAA
CATTTACGCC TAGCGGCGTG TTACTGGCAC AACTTCTGTT GGGACGGCGC TGATGTATTT
GGCGCAGGTA CGTTTAATCG CCCTTGGCTG CAAGCAGGTG ATGCCATGCA GCGCGCAAAA
GAAAAAGCTG ACGTCGCGTT TGAGTTTTTC TCAAAGCTAA ATATTCCTTA TTACTGCTTC
CACGATGTTG ATGTTTCCCC TGAGGGCAAC TCAATTAAAG AGTACATTAA CAACTTTGCT
CAGATGACTG ACGTACTAGA AGCCAAACAA GAAGAAACGG GTCTTAAGTT GTTATGGGGC
ACCGCAAACT TGTTCAGTAA CCCACGTTAC GCTAGCGGTG CTGCATCTAG CCCGAACCCT
GAAGTATTCA CTTATGGCGC GACTCAAGTA ATGCACGCTA TGAATGCGAC TAAGCGATTA
GGCGGTGAAA ACTACGTGCT TTGGGGTGGT CGTGAAGGTT ACGAAACCTT GCTAAATACC
GATTTACGCC AAGAGCGTGA GCAACTCGGT CGTTTCATGA ACATGGTTGT TGAGCATAAG
CATAAAATTG GCTTTAAAGG ATTATTGCTA ATCGAACCTA AGCCACAAGA GCCGACTAAG
CACCAGTACG ATTACGACAC CGCAACTGTT TATGGCTTCT TGAAGCAATA CGGTTTAGAA
AACGAATTTA AAGTGAACAT TGAAGCTAAC CACGCCACCT TGGCCGGCCA CTCGTTCCAG
CATGAAGTCG CTACGGCTAT ATCACTTGGC TTATTTGGTA GCATCGATGC CAACCGAGGT
GACCCTCAAC TAGGTTGGGA TACCGACCAA TTCCCGAATA GCGTTGAAGA ATTGTCATTG
GTTATTTATG AAATTCTTAA AGCGGGTGGT TTTACATCTG GTGGCTTTAA CTTTGATACT
AAGTTGCGTC GTCAAAGCTC AGATCCACAA GATATGTTCA TCGCCCACAT TGGCGGCATG
GATCACTTAG CAATTGGCTT GAAAAAAGCC GCGCTGATGA TTGAAAATGA CTTCCTTGGT
CAAGCTGTCA GCAAGCGTTA CGCAGGTTGG AACGGCGAGC TAGGTAAGGG TATTCAAGGA
GGCGATTTCA ACCTTGAGTC ACTCGCTAAC CTCTGCGTAG ATAAGAACCT ACAACCTAAG
CACGTCAGTG GCCAGCAAGA GTTATTAGAG AACAAGGTTA ATAACGTTTT ATACGGCTAA
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| Protein sequence | MAEYFKDIPK VKFEGTSSDN PLAFRHYNPE ELVLGKSMKE HLRLAACYWH NFCWDGADVF
GAGTFNRPWL QAGDAMQRAK EKADVAFEFF SKLNIPYYCF HDVDVSPEGN SIKEYINNFA
QMTDVLEAKQ EETGLKLLWG TANLFSNPRY ASGAASSPNP EVFTYGATQV MHAMNATKRL
GGENYVLWGG REGYETLLNT DLRQEREQLG RFMNMVVEHK HKIGFKGLLL IEPKPQEPTK
HQYDYDTATV YGFLKQYGLE NEFKVNIEAN HATLAGHSFQ HEVATAISLG LFGSIDANRG
DPQLGWDTDQ FPNSVEELSL VIYEILKAGG FTSGGFNFDT KLRRQSSDPQ DMFIAHIGGM
DHLAIGLKKA ALMIENDFLG QAVSKRYAGW NGELGKGIQG GDFNLESLAN LCVDKNLQPK
HVSGQQELLE NKVNNVLYG
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