Gene Patl_3693 details

Gene Information

• Locus tag: Patl_3693
• ID: 4175473
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 4457315
• End bp: 4459291
• Gene Length: 1977 bp
• Protein Length: 658 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 638056723
• Product: LppC putative lipoprotein
• Protein accession: YP_663249
• Protein GI: 109899994
• COG category: [R] General function prediction only
• COG ID: [COG3107] Putative lipoprotein

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATTAA TCAGGTCGGT AGTGGTTGTT AGCCTAGTCG TTTTTATGGC CTCCTGTGCA 
GATACGCCGA ACAAAAAAAA CGCGGTAAAA CGACCAGATA TCAAGGTAGT GCAACCAGAC 
CGTGAGCTTA ACAGTCAATA TTACCTAAAC CAAGCGCAAC GTCAGTTTGC CGAGACGGGT 
GACACTACTC AGCGTAATAG ATTGATATTG CAAGCCGCGT CTGTTTTACA GCAAGAAGAT 
AATTGCAATG CCAGTATAAA GTTGCTTAAT ATCCTTACGC CTGAACTTAT TCACCCTGAC 
CTTCAATCTG AAGCTCAATT GCTGTTGGCA CAGTGTTATA TGCAACTGCC TACCCCTGCG 
GTATCCCAAG CACAAAAGCT TGTGAATAAA TTGCTTAAAA GCAAACATGA GTCAGCTCAG 
CTCAGTGAAT TACAGGCCCT TATTGACGAA CAGCAACATG CTTGGTTAGC CGCGAGTGAA 
AATTTATTAG CCGCTGGCAA CCTCAATCAA GAAAATAGCC TTAGATTATG GCGGGCGATT 
GGCAATCTAA CCAACAAGCA AGAAAAGCAA GCCGTGATAG ATGAGCCCAG GCTCAAGTCA 
TGGATTGAAC TTAAAACGAT TATTCAACAG CTAGGCACGC AGCCTCAAAG ACTAAAAGTT 
CAGGTCAACC AGTGGCAAAA TAAGCATTCA TCCCACCCCT TATCTGAAGT ACTCCCGGAG 
GCGTTAGTCA ACGCCATGGA GCAAGACACT ATAACGCCTA AGCGAGTGGC AGTATTGCTA 
CCGCTGACGG GTAGGCTTTC TAGCCAAGGG AACGCAATTA AAGACGGAAT TATTGCAGCG 
TACCTAGCTC ATTTGAATAG CGCGTCAACG TCAAATAGCC AAGCTTCAAC CCAGAACATT 
GAATTACAGT TTTTTGATTC AGCCTTAAAA ATACCCGAGG AGTTGAGTGA ACAGGTCACT 
GACTACGATA CGATTATTGG GCCGCTACTA AAAGAGAAGA TTGCTCAATT AATAGCGTTG 
TTACCAGCCA ATAAATCGGT ATTAGCGCTA AATCGTATTG ACTCTATTAT CGAAAATAAA 
ACGACGGACA ATACATTAGT CGATAACATC ATTGTGGATC AAGCAGTGCC GGCAGAAAAC 
ATAACACTGC CAGATGTTAA TAACGCGTTT GAAACACTTC CCGCAGCATC GCCAGAAGTG 
TTTTACTTTT CACTAGCCCC TGAAGATGAA GCCATTCAAT TGGCCAAGCA CATCCATGAC 
CTAGGCCTGC GTCACCCCAT AGTATTAGCG GCTGACACCA GTACCACCCA GCGCATGTCT 
GAGGCTTTCA TTCAACAATG GCAACAGAAT GACCAACAAC AAGATTACGT TGTCCCCGCA 
ACAGGCACCT TTACCGATAG TAAAAATATG CGCAAGTTGG TGTCTGAGTT ATTAGATGTA 
GCCCAAAGCC GCCAGCGCAT GAAACAAATA GAACTACTTA CCACTAGTGA AGTGTACGCA 
GTAGAGCGCA ATCGCCGGGA TGTAGATGCG ATAATTTTGT TTGCCAACCC GGAACAGACT 
GAATTACTTA ATCCTATTAT TGAGTCGAGC TTGAGTCCTT TCGCCGCTCG CGAAATCTCC 
GTTTTCGCCT CATCAAGAAG TTACACCCTG GAATTGAACA AAAACAGTAT TCGAGATTTA 
CGCAATTTAA CCTTTATTGA TATGCCATGG ATGATGCCCA ATAACCCATG GCAAGACTTA 
GCAAATGATA CCCAGGCCTT ATGGCCTCAA ACCCAAGATA GTTTGTTACG TCTATTTGCT 
CTTGGTTACG ATGCCTATAA CCTAGTGCCT AAGCTGCGCC ATTTGAAACT CCTGCCGATC 
ACTTCGGTGA AAGGCTTAAG TGGCGAGTTA AGTATCAGTG CGGATGGGGA AGTTCACCGC 
GTATTGCCCT GGGCGAAAGT AGCGCAAGAC CGGGTCATCC CCATTGCCAT GGACTAA 

 

Protein sequence

MKLIRSVVVV SLVVFMASCA DTPNKKNAVK RPDIKVVQPD RELNSQYYLN QAQRQFAETG 
DTTQRNRLIL QAASVLQQED NCNASIKLLN ILTPELIHPD LQSEAQLLLA QCYMQLPTPA 
VSQAQKLVNK LLKSKHESAQ LSELQALIDE QQHAWLAASE NLLAAGNLNQ ENSLRLWRAI 
GNLTNKQEKQ AVIDEPRLKS WIELKTIIQQ LGTQPQRLKV QVNQWQNKHS SHPLSEVLPE 
ALVNAMEQDT ITPKRVAVLL PLTGRLSSQG NAIKDGIIAA YLAHLNSAST SNSQASTQNI 
ELQFFDSALK IPEELSEQVT DYDTIIGPLL KEKIAQLIAL LPANKSVLAL NRIDSIIENK 
TTDNTLVDNI IVDQAVPAEN ITLPDVNNAF ETLPAASPEV FYFSLAPEDE AIQLAKHIHD 
LGLRHPIVLA ADTSTTQRMS EAFIQQWQQN DQQQDYVVPA TGTFTDSKNM RKLVSELLDV 
AQSRQRMKQI ELLTTSEVYA VERNRRDVDA IILFANPEQT ELLNPIIESS LSPFAAREIS 
VFASSRSYTL ELNKNSIRDL RNLTFIDMPW MMPNNPWQDL ANDTQALWPQ TQDSLLRLFA 
LGYDAYNLVP KLRHLKLLPI TSVKGLSGEL SISADGEVHR VLPWAKVAQD RVIPIAMD