Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3604 |
Symbol | |
ID | 4175384 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 4342028 |
End bp | 4345546 |
Gene Length | 3519 bp |
Protein Length | 1172 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638056634 |
Product | PAS/PAC sensor hybrid histidine kinase |
Protein accession | YP_663160 |
Protein GI | 109899905 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCACGAC TAAACCTGCT AGACGCGTAC TACTGTGGAT TAGAAGCCGT AAGTAGCGCG ACACTGCACA TAACCAAAGA TCAAATCGTA TTGTTTGCGA ATGAAGCTGC TTGCGAGCTG TTTGGGCTAG ACAGCAAATC GTTGATTAAT ACGCCGGTCG AGCGGTTATT GGAGAATTTT TACTCTAGCA ATGATCACGC ATTGAATAAT AATCTGTTCT ACTCAGAAGC CAAGGGCAAC AAGCTGCTTG AGGGCATATT CAAATGCACA CTTGCAAGCG GCGAATACCT CATAGCACAA GCCAGTGTTA AATCTGTTGA TTGGCTTGAT GATGACTCCT CATACGTCGT CACAATTGAC CCAGATAATG TTCGCCCTCC TTCGGGCAAT GAAATTTACG ACATCATTCA CCGCATTAAC GTAGCCACTA CCGTGGCTCA AATTGGTATT TGGGAGTTCA ACCTTGATGA GCAAAAACTC ATATGGGACG AGCAAATGTA TACGCTATAT GGTTGCAACC CCAAGGTCGT TAGTGGTGAA TTAAGTCAGT GGAGTGATTT GCTTCACCCT GATGATAAAG AGGAAGCGCT GAGTGCCTTA AATCATTCTT TAACGAAGAT TGCTAAACTT GATATTGCCT TTCGTATTAT TACTCCCTGT GGCGAAACTC GGCATATGCG CGCCTTTGCT AGGCCATTGC GCAGCCCAAC GGGCAATGTG GCGAAGATTA TCGGAGTGAA TTACGACATT GGTGCACAGA AGCAACACCA GCAATGGTTG GAAAATGGGC TGCAAAGCAA CGAACTGTTT ATTAAAGTTT TACGAGAAAC TGACAACGCT GTCATCATCA CGGACGAGAA CGTCAAAATA AAATGGGTAA ACCCGGGCTT CACTCGTATC ACAGGGTATT ACCTTGAGGA AATCTTAGGT AAAAACCCTG GCCACGTGCT GCAAGGTTCA CAAAGCAACC CTGACAAAAT AGCCATTATG CGCAGAGCCG TTGAAAAACG AGAACGATTC AATGTGGAAA TTCTCAACTA TCGCAGAGAC GGCGAGCATA TTTGGTTGAA AATCAATAGT CACCCTATGT ACCTAGGCGG CAAGTTTAAC GGTTTTATTG CCATCCAAAG TGATATCACC GAGCAGAAAA ATGCAGAGTT AGCTCTGCTT AAAGCCAATA AGATTCAAAA AGCCATACTT GATAGTGCTC ACCTGTTAAT GATTTCATGT GATGCGCAAG GCAAAATACT GACCTGCAAT CAAACTGTAG AAAAAGCATT GGGCTATACC AAAGCAGAAC TAAAACAAAG CGGCAATATT CAGCAGTTTA TGATGCAAAA TGAGCTGATT GATTTCATGC AAGTCAGCAC CCAGCGACAA GGTTCATCAC TCGACGCCTT CTTCTATCTA GCCTCTCAAG GGCAAGTGGA TGAAAATCAG TGGACGTTCG TAACCAAAAA CAATGTTCAA GTTCCCATGG AGGTCACGGT TACCGGGGTC ATGTCACCCG ATAATCAGGT AGAACGCTAC TTACTCGTTG GCCGAGATAT CAGCCAAATT AAGCAATTTG AAAAAGAGCG CCGCCACCAA CAAGATTTAC TAGAAACCAC AGGCGAAATG GCTAATCTGG GAGGTTGGGC ATTAAATCTT GAGACCGATG AAGTCACTTG GTCAGACCAA GTTTACCGGA TTCATGAATT ACCGGTCGGT TCAGATGTAG ACCTCTCCAG CGCGATGAAG TTTTATCCTG AGGATGTTCG CCCATTGGTG CAAAAAGCCA TTGATAGCTC CATAGCTGCC GGCAAAAAGT GGGATCTGCA GGTTCCTTTT ATTACGGCCA AAGGTAAACA TATTTGGGTC CGGGCTGTTG GCTATGCAGA ATATCAAAAT GGTCGACCTG TTGTATTGAG AGGCGCTTTT CAAGATATCA CCGAAATGAA AAAAGCCGAA GAGCAAGCCA AAGAAGCGAG CCGCGCGAAA AGCGAATTTT TGGCTAACAT GAGCCATGAA ATACGTACTC CCATCAATGG GATCGTTGGT ATGAACGACT TATTGCTAGC CACTGAATTA ACCGACAAAC AGCGTCATTT TGCTGAATTG GTGCACAGTA GTAGTGAATC TTTATTGTTA CTGATCAACG ACATCCTAGA TTTTTCTAAA ATCGAGGCAG GCAAATTAAG TATTGAGTCT ATCTACTTTG ATCTACATCT TTTGTTGGGC AATATTATTG ATACATTTGC TAGTCGCGCC CAACAAAAAG GGCTTGAGCT CGTGTTCGAT TTGCAGATGG ATGTGCCCCA ATGGATAACA AGCGATCCCG GTCGTATACG GCAAATTTTG AACAACCTAT TAGGTAATGC CATCAAATTT ACTCATCACG GTGAAGTCAT TATGCGGGTT GCACTAGAGG GGGATAATCA ACTTAAATTC TTCGTGCAAG ATACCGGGAT TGGCATTCAC GAAGATAATC AAAAAGCGTT GTTCTCTAAA TTTATGCAGG TTGATTCATC AACCACACGC CACTTCGGTG GCACAGGGCT CGGGTTGGCC ATCAGCAAAC AATTGAGTGA ACTTTTAGGT GGCACAGTCG GCGTATCTAG TCAGTGGCAA CAAGGCTCCA CTTTTTGGTT TACCATAGCG CCTGAAGCGT TGAACGAAAA CCAAATACAA TTTAGTCCGT TGTTTCCTGA GCGCGAAGCG CCGCTGCAGG TTTTATTGGT AGACGACAAC CCCACGTTAA GCACAGTTTT AGGTAAATGG CTCACGTCAA ATAACATGGT GGTACAACAC GCTGAAAGTG CTTCAAGTGC GTTAAAAGCA CTCAGACAGT CGCATCTAAA AATGACGAAA ATAGACGTCG CATTAATTGA TAGTAATTTG GCTGGCATTA ATGGAATTGA ACTCACCAAA GCGATCCGCA GCAACGACCT CTTTGCCAAG TTACACATCA TATTGATGAC GCCCCACGAC TGGCTTGAGA AGGGTACGTC AAGCCAACTA GCTAACCCTG TTAGTTATAT AGCGAAACCG GTTAAGCCAG AGACACTCAA AGGAGCGTTT ACTGGAGCAT TGGAAAACGG CGATAACACC AAGCTCATTA CCGCCTTACC CGAGACCAAA CTACTCAACA AATATCGCCA AGCGCCACAT ATTTTATTGG TAGAAGATAA CTTTATTAAT CAACAAGTGG TTATTGAGAT GCTTAAAAAG CTGCACTGCA GCGTACAGGT GGCTGAGAAT GGCCAAGAAG CAATTCATAC TTTGGAAGAA TCAGAAGCGA AATTTGATGC GATATTGATG GATTGCCAAA TGCCCATCAT GGACGGCTAC GAGGCGAGTC GTACCATCCG CAAAAGTCAG CATAGTAATT ACGCATCAAC GTTGCCTATC ATCGCATTGA CCGCCAATGC CATGAAGGGA GATAAGGAAG CCTGCTTAGC TGCTGGCATG AATGCTTATT TGACTAAGCC AATCGTGTTA ACTGAGTTGA GGGCTGAGCT CATCAAGTGG TTAGCTTAA
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Protein sequence | MPRLNLLDAY YCGLEAVSSA TLHITKDQIV LFANEAACEL FGLDSKSLIN TPVERLLENF YSSNDHALNN NLFYSEAKGN KLLEGIFKCT LASGEYLIAQ ASVKSVDWLD DDSSYVVTID PDNVRPPSGN EIYDIIHRIN VATTVAQIGI WEFNLDEQKL IWDEQMYTLY GCNPKVVSGE LSQWSDLLHP DDKEEALSAL NHSLTKIAKL DIAFRIITPC GETRHMRAFA RPLRSPTGNV AKIIGVNYDI GAQKQHQQWL ENGLQSNELF IKVLRETDNA VIITDENVKI KWVNPGFTRI TGYYLEEILG KNPGHVLQGS QSNPDKIAIM RRAVEKRERF NVEILNYRRD GEHIWLKINS HPMYLGGKFN GFIAIQSDIT EQKNAELALL KANKIQKAIL DSAHLLMISC DAQGKILTCN QTVEKALGYT KAELKQSGNI QQFMMQNELI DFMQVSTQRQ GSSLDAFFYL ASQGQVDENQ WTFVTKNNVQ VPMEVTVTGV MSPDNQVERY LLVGRDISQI KQFEKERRHQ QDLLETTGEM ANLGGWALNL ETDEVTWSDQ VYRIHELPVG SDVDLSSAMK FYPEDVRPLV QKAIDSSIAA GKKWDLQVPF ITAKGKHIWV RAVGYAEYQN GRPVVLRGAF QDITEMKKAE EQAKEASRAK SEFLANMSHE IRTPINGIVG MNDLLLATEL TDKQRHFAEL VHSSSESLLL LINDILDFSK IEAGKLSIES IYFDLHLLLG NIIDTFASRA QQKGLELVFD LQMDVPQWIT SDPGRIRQIL NNLLGNAIKF THHGEVIMRV ALEGDNQLKF FVQDTGIGIH EDNQKALFSK FMQVDSSTTR HFGGTGLGLA ISKQLSELLG GTVGVSSQWQ QGSTFWFTIA PEALNENQIQ FSPLFPEREA PLQVLLVDDN PTLSTVLGKW LTSNNMVVQH AESASSALKA LRQSHLKMTK IDVALIDSNL AGINGIELTK AIRSNDLFAK LHIILMTPHD WLEKGTSSQL ANPVSYIAKP VKPETLKGAF TGALENGDNT KLITALPETK LLNKYRQAPH ILLVEDNFIN QQVVIEMLKK LHCSVQVAEN GQEAIHTLEE SEAKFDAILM DCQMPIMDGY EASRTIRKSQ HSNYASTLPI IALTANAMKG DKEACLAAGM NAYLTKPIVL TELRAELIKW LA
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