Gene Patl_3559 details

Gene Information

• Locus tag: Patl_3559
• ID: 4175339
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 4278819
• End bp: 4279325
• Gene Length: 507 bp
• Protein Length: 168 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 638056589
• Product: RDD domain-containing protein
• Protein accession: YP_663115
• Protein GI: 109899860
• COG category: [S] Function unknown
• COG ID: [COG1714] Predicted membrane protein/domain

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.0544262
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGACTTCTG AGCATTATTA CCGCGCTGGT TTTTTTCGTC GCTTAGCCGC GATTATTTAC 
GATATTTTGG TCGCTGTTGC TGTGGGTATG TGCGCCGCTA TGGTGATGTT GGTGGCTATG 
TTGTTATTGG TTGAAAACAA CGTGCTGGAC AACCACGGCT ACGAGCATTT CAGTGATTTG 
ATTCAGCATG CGCCTGTTTA TCAATACGTA TTACAAGGTT GGGTTGGCGC TTGGGTTATC 
GCGTTCTTTT TATGGTTTTG GCGCAACGGC GGCCAAACGA TTGGTATGCG CGCTTGGCGT 
CTGCGTATCG TGAGCACGAA TGAAAACCCG TTAACGTATC CCCGCGCATT TTTACGCATG 
GTGACGTCAT TCTTAGGTTT GGGTACCTTG TTGGTATTAC TCGACTATAA ACATAAGCAA 
TCGCTGCAAG ATCGCATTGC GGGTACCGAA GTGATTTGCC TAACGAAAGA AGCCAACCAC 
CATCGCAGTT GGCGTCATCT GAACTAG 

 

Protein sequence

MTSEHYYRAG FFRRLAAIIY DILVAVAVGM CAAMVMLVAM LLLVENNVLD NHGYEHFSDL 
IQHAPVYQYV LQGWVGAWVI AFFLWFWRNG GQTIGMRAWR LRIVSTNENP LTYPRAFLRM 
VTSFLGLGTL LVLLDYKHKQ SLQDRIAGTE VICLTKEANH HRSWRHLN