| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3545 |
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| Symbol | |
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| ID | 4175324 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4260675 |
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| End bp | 4262384 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638056574 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_663101 |
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| Protein GI | 109899846 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGGTAC TCATTGTTGA CGATGATGCT GTTGACAGGC GTGTTGTAAG AAGAACGCTT
AGCGCGTCGG GTGATACCTA TCATGAAGTG CAAGAGGCTA GTTCTGTTGC AGAAGGGCTT
GAGCTACTTG ATGGCAATCA ATTTGATGTC ATCTTACTTG ATTGTCGTAT GCCGGAGGTG
GATGGCATTG AAATGGTCAC TGATATGCAT GCCAAGCCAG ATATGGGTAA TACTGCGGTC
GTTATGATAA GTGCCTCAGA CGATCCCGCT TTGGCGCTGC AATGTATCGA AGCGGGTGCT
CAAGATTATA TTTCTAAAAA TGAGATCACG TTAGCCAAGT TAGAGCGTGC GATTTTGCAT
GCTAATAAGC GCTTCGAAAT CGAGCAGCGC ATGCACATGA GTTATTTAGA AGTGAAAAAA
ATGGCTGAAA TGGACCCCTT AACAGGCCTG TCAAATCGCT ACCATTTTGA AGAAACCTTA
AAAGTGATGA TTGCTAGCAA TAAACGAGAC GGCAGCAATG TTGCCCTTTT AGCATTGGAC
TTGGACAACT TTAAGCACGT GAATGACACC ATGGGACACG AAGCCGGTGA CAGTGTGCTT
AAGCAGTCTG TAAAGAGAAT ACGCAGTTGT TTGCGCAATA ATGAAGGGTT CGCACGCCTA
GGAGGAGATG AGTTCGCCAT TATTCTGGGG GACATCGCTC GTGTCGAGGA TGTAAACAAC
ATTAGCAATC GTGTGCTCAA TTCATTTAAG CAGCCCTTTA ATATTCAAGG AAAAGAATTT
GTATGCGGCG TTAGCATAGG TGTAGCGCTA TGCCCAGTGG ATTCAGGTGA TTCTCAAGCA
CTGTTGAAAT GTGCAGATAT TGCTATGTAT CGCGCTAAGC AAGATGGCAA AAACGGCATT
AGGTTTTATG AGCCTCATTA CCAAATAGAA TTTAACCAAC GGTATATTAT TCATAATGCC
TTGACGAATG TGCTCGAAAA TGACTCGTTC AGGTTATTCT ACCAACCTAT TTTCTGTGCT
AAAAGTGACA AACTCCTAGG CTTTGAGGCA CTGATTCGCT GGCCAGAAGC AGAAATATGC
TACACGCCAG ATGTGTTTAT TCCCGTGGCA GAACAAAGTA AATTAATTGA TCAAATTGGA
CGATGGGTCA TTGAAACCGC AATCGCACAG CTTTCGACCT GGCATCAACG GTTTGATGAA
AACTTGACCC TGTCGATTAA TATCTCCCCG GTACAGTTGC AAAATGATGG GCTACTGAGC
GAGTTTCAGC GCACGCTTGA AGCGCAAAAC GTGTTAGCAA ATAACATCAT ATTAGAGATA
ACTGAAACCG CATTGATTAA AGATAACAGT AAGGTAACGC ACTCTTTGAA TATCTTGTCT
GAAAATGGTT TCAAAATTGC GCTAGATGAT TTTGGTATGG GGTTCTCGTC GGTCGCGCAC
TTGATGGATT ACCCCATTGA CATTGTTAAA TTAGATAAGA GTATGCAAGC CACTATGCAA
ATCACAGATA AACGCTTAAG AGTTTTTGAA GCGTTAGCAC TGATGCTTAA AAAATTGGAT
TTCATTGTGG TTGCTGAGGG GATAGAAACA CAGAATCAAG TAAGCCTATG CCAAAAGTTC
GAATTAGATA GGCTACAAGG GTATTTACTC GGCATGCCAA TGGACGTCAG TAAATGTAGT
GCGTTTCTGG CTCTGCATCA TAAAAAATAG
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| Protein sequence | MKVLIVDDDA VDRRVVRRTL SASGDTYHEV QEASSVAEGL ELLDGNQFDV ILLDCRMPEV
DGIEMVTDMH AKPDMGNTAV VMISASDDPA LALQCIEAGA QDYISKNEIT LAKLERAILH
ANKRFEIEQR MHMSYLEVKK MAEMDPLTGL SNRYHFEETL KVMIASNKRD GSNVALLALD
LDNFKHVNDT MGHEAGDSVL KQSVKRIRSC LRNNEGFARL GGDEFAIILG DIARVEDVNN
ISNRVLNSFK QPFNIQGKEF VCGVSIGVAL CPVDSGDSQA LLKCADIAMY RAKQDGKNGI
RFYEPHYQIE FNQRYIIHNA LTNVLENDSF RLFYQPIFCA KSDKLLGFEA LIRWPEAEIC
YTPDVFIPVA EQSKLIDQIG RWVIETAIAQ LSTWHQRFDE NLTLSINISP VQLQNDGLLS
EFQRTLEAQN VLANNIILEI TETALIKDNS KVTHSLNILS ENGFKIALDD FGMGFSSVAH
LMDYPIDIVK LDKSMQATMQ ITDKRLRVFE ALALMLKKLD FIVVAEGIET QNQVSLCQKF
ELDRLQGYLL GMPMDVSKCS AFLALHHKK
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