| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3541 |
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| Symbol | |
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| ID | 4175320 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4248496 |
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| End bp | 4251525 |
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| Gene Length | 3030 bp |
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| Protein Length | 1009 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638056570 |
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| Product | response regulator receiver protein |
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| Protein accession | YP_663097 |
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| Protein GI | 109899842 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGAAAA TGTCTCCCGC CTTCGTCCAG CTAGCAGATG AATTTGAGCG TATCCAATTG
TTCGTGGATA AACCAAATAC AATACATATT CGAGAGCTAA AAAAGCACAC TGCCAATACT
GAATTTATGT TTGATATTGC GCCACTTAGC CTAGCCGTCA ACGCGATTAA GAGTGATCAA
TCAGCACCTT TGTTAGTGGC ATGTGATAGT GAAGAGCATG CAATCGCATT AACTGACAAA
TACGAACTGC TCGAGCAAGA CGTTTATTGG CTAACCGCTG ACACCGCAGC CTTGCAAGAT
ACTCAGCCCG TTCCTGGGCA TATATTCGTT GATTGGCGAG CAAGCGGTGT ATTAGCGATG
ATGCTTTCAC TGTTGAGACA ACAAGCCAGC ATTAGCCAAG ATAAAGTGTA TGTTGAGCAT
AAACTAAACC TATTGTCAGA TTGTTTAGGA GATCTGTCGT TAACCTTAAA TGCCAGTGGG
GAAATTAAAG ATATTAACCC TGAGTTGTTG TCTATGCTGG GAACCAAAGG GTTATCAGCG
ATAGGGCAAA ATTGGCTTAG CAGCTTGCAT ATTCCCTCTT CTACAGCGAA AAAGCGCCTG
CAGCATATAT TGTCTGACTT AGGGCTTACG CATTCCATGA CGCGTCTACC GCCATTTCCC
ATTCAATTAG ACAAAACCGT ATTGATGGTA GATGGGTTTG TCGGGCCGTT ACCCAATGAT
GAAACCTTGC TCATTTTGCG CGAAGTGGCT CAGTGGCAAA GCCAAGAATG GGTTGCTCAG
TTGAGTGAGC AAAGTACCCC TGTCACCTTG CTGCTGATTA ATCCTGACGA ATTTGCAGAG
CTTAATCGTG TTCATGGGCG TGAAATTGGC GACGAGGTGC TCAAAGAAGT GATGCAGTCT
ATTTCGGCTG TATTGAGAGG CAATGATTTT GCCAGTCGTT ACAGTGGGGC TGTGTTTGCC
GCGCATTTAC CTGAAACAAA CGAAAAGCAG GGCCAGATCC TCGCCACGAG GATGTTACAG
AGCCTGCGCT CTATGTCATT TACAAGTAAA AAGCTGAAAC TAGAATTTAG CCTAGGCTTA
GCGTCGTTAG ATTCAGAAGA GCAGTTAGGA GAACAGTCAC CGCTGGAATT ATTTCGTCGA
GCGAACGCAG CGCTACAAGC TGCGCGTAGC ATAGGGGGCG GTAAACTTGT CAGTTGGCAA
CCACAGTTTG ACGCTAATAT TTTAGCCAAT CTTGACCGTA TGAGCGGTAA GTTCTCACAA
GCACCCAGCG ATGATTTCAG ATTGATGAAC TTGCAGTGGG ATATTATTCG CCTTATTGGT
AATACCCATT CTTTAAAAGA TTTTTCATCC CAAGTCTGTC AATTACTGGC CAGCGGATTA
CAGAGCATGT TTGCTGGTCT GTATATCCAA CAAGGTGAAG CCTTGTCATG TTTATCTCAT
AGCGCAGCCA TTGCGGACAT CGAGGTTCAG CGAATACACC AGTGGGTAAA TAGTAATATA
ACGAATTCTT CTACGCATGA GCGTTTAGCG CAATCAATAA CAGATTTATC TGAATTTCAA
TGCGCTGTTA TCCCATTGGA AACCAGAGCC CAATGCTTGG GCTTTTTAGT GGTTTGCTGG
ACGCCAAATG GAAAGGAAAA CGCACACAAA TGCGCTGAGC AGTTAGCGCA AGTCACTCCT
AACTTAGCGG CTGCTATTGA CCGTATTATG CTACTTGAAC AAGATGAGAA TCGCCGCGTT
GTAGCAGACA AAGATCCATC CCCAGAGCAT GAATTGCTGT TTGAATCAGC AGCAATGCGT
ACCTTAATGC AGCAAGTACA ACTAGTCGCT CCCACTGACG CGTCTGTGCT AATCATTGGG
GAGTCTGGAA CAGGAAAAGA GGTCATTGCT CAGCAGTTGC ATAATCACAG CCTGCACCCT
GATAAGCCGT TTATCACGGT CGATTGCTCC ACCATAGTCG AGCATTTAAT TGAAAGTGAG
CTATTTGGTC ATAGAAAAGG TGCCTTCACT GGGGCAACAA CTGACCAACC AGGCAAGATT
GCCCAAGCAG ATGGCGGTAC TCTTTTCTTG GATGAAGTGG GTGAACTACC GCTGGACATC
CAATCAAAAT TACTGCGTTT TGTTCAGGAA AAAACCTTTG TTGCGGTAGG TGACCAACGT
GTCAGAAAGG TTGACGTGCG CTTAGTATTG GCCACAAATC GAAATTTGCC AGACGAAGTA
GCACAAGGCC GCTTTAGAGC AGATCTTTAT TACCGTATTA ATGTATTCAC CCTTAACTTG
CCAGCATTGA ACGACAGAGG GGATGATCCT CTGCTCTTGT GTCGGCATTT TTTGCGTAAG
TTTAGCCGGC AATACCACAA AGATATTTTG GATTTTTCTG CCACAGCCAT AGACAAGCTG
AGCGCATATA CATGGCCGGG TAACGTGCGA GAGTTACGTA ATTGTATGAT GCGTGCGGTC
ATACTTTGCG CCGGTGCATA TGTGGAGCCT GAGCATTTAA TCTTGCAGGA ACAGGGAGAC
GACGTCTCGT TAAAAAGCAG TGCCAATTCA TCTGCTCAGA TGCCAGATTT ACTCACCGCA
GGGACTAAAC CTGATAGCGT GACATTAGAG CAGATTTCGG CGCTGCTAAC ACAAACAATT
GCCTTTGCAT GTCAACAAAA TCAACTGTTC TCAATCAGTG GTTGGTTGGA AAAGCAGTGG
TTGAATCAGT GCGTAGTAAA GTGGGGCAGT TTATACCAGG TCGCTTTGCA GCTTGATCAA
TCAGAATCGA CCATCAGGCG GCGCTATGCC AAGCTGAACA AACAGGATTT TGATCATCTC
GATCTCGCTG AGTTAACTCT GCTATGCAGT CGAATTTTTA CCGAGATACT TGAGCATAAG
CCGCACAGTG CTTCGTGGCC AGTAATTGAA TCTTCATTGC AGCAACTGGT GTTACAGCAA
GATTTGAGTC AGCAACATAA AGCCAAGCTG CTAGACGTCA CTCAGCCCAC GTTACGCAAA
ATCATTCAGC AGATCCAAAC GGCTGTATGA
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| Protein sequence | MMKMSPAFVQ LADEFERIQL FVDKPNTIHI RELKKHTANT EFMFDIAPLS LAVNAIKSDQ
SAPLLVACDS EEHAIALTDK YELLEQDVYW LTADTAALQD TQPVPGHIFV DWRASGVLAM
MLSLLRQQAS ISQDKVYVEH KLNLLSDCLG DLSLTLNASG EIKDINPELL SMLGTKGLSA
IGQNWLSSLH IPSSTAKKRL QHILSDLGLT HSMTRLPPFP IQLDKTVLMV DGFVGPLPND
ETLLILREVA QWQSQEWVAQ LSEQSTPVTL LLINPDEFAE LNRVHGREIG DEVLKEVMQS
ISAVLRGNDF ASRYSGAVFA AHLPETNEKQ GQILATRMLQ SLRSMSFTSK KLKLEFSLGL
ASLDSEEQLG EQSPLELFRR ANAALQAARS IGGGKLVSWQ PQFDANILAN LDRMSGKFSQ
APSDDFRLMN LQWDIIRLIG NTHSLKDFSS QVCQLLASGL QSMFAGLYIQ QGEALSCLSH
SAAIADIEVQ RIHQWVNSNI TNSSTHERLA QSITDLSEFQ CAVIPLETRA QCLGFLVVCW
TPNGKENAHK CAEQLAQVTP NLAAAIDRIM LLEQDENRRV VADKDPSPEH ELLFESAAMR
TLMQQVQLVA PTDASVLIIG ESGTGKEVIA QQLHNHSLHP DKPFITVDCS TIVEHLIESE
LFGHRKGAFT GATTDQPGKI AQADGGTLFL DEVGELPLDI QSKLLRFVQE KTFVAVGDQR
VRKVDVRLVL ATNRNLPDEV AQGRFRADLY YRINVFTLNL PALNDRGDDP LLLCRHFLRK
FSRQYHKDIL DFSATAIDKL SAYTWPGNVR ELRNCMMRAV ILCAGAYVEP EHLILQEQGD
DVSLKSSANS SAQMPDLLTA GTKPDSVTLE QISALLTQTI AFACQQNQLF SISGWLEKQW
LNQCVVKWGS LYQVALQLDQ SESTIRRRYA KLNKQDFDHL DLAELTLLCS RIFTEILEHK
PHSASWPVIE SSLQQLVLQQ DLSQQHKAKL LDVTQPTLRK IIQQIQTAV
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