| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3540 |
|---|
| Symbol | |
|---|
| ID | 4175319 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 4246624 |
|---|
| End bp | 4248060 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638056569 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_663096 |
|---|
| Protein GI | 109899841 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCAGCC TGCGGGAGAT CAAATTTTTA GTTAGCGGTC GCTTAAAGGC GTTTGCTGCG
GTTTTGTTGA TCGCGACTGT GACCACAGCA GCTCAGGCCG CGCAACGCGT TAGCGAAGCG
TCGACAGCAA GATTAACTGC TCAATTATCT ACCCAGTTAA CGGCACAACT AATCGTTGGC
GAAAGTGTAC CTGCTTACAA AGCCATTGCT CTGAAAGGTC TGGGGCCTGA AGGTGGCACA
GTCGATGTTA AACTGCTCAA AGACGGCACG ACGGTTACTA TGGCCAGAGC GCACATAAAC
ACCCAAGGGC AGTGGCAAGT ATCACTTGCT CAGCAACCTC CTGGGGGGCC TTATCAGTTC
CTTATTAGCG ACGGTGAACA GACCCAGTAT CTGCATGATA TTTACGTGGG TAATGCTGAG
CCTAGTATGC GAAATCCAAA GGGGGACATT ATTCTATCCA CCCGCTTAAG CGATAATATG
TTACTTCAAC CCGGTGAAAA AATTAACGTT GGTGGCCTTG CCGAACCAGG GCGAACCGTT
GATATAAAGC TGATTAAAGA ACAAGAAACC TACACGATGG CCAGGGTGCA AGCAGGCAGC
AATGGTCTGT GGCATGTGAC TATGCCAGGA CAGAAAGCTG GCGGCCCATT TAAGTTGACT
GTTACTGATA GCACACACTT TAAGACCGTA AACGGTATTA TTATTGGTCA TGCAGATGTG
AAGAAAGTCA CACCTGTTAA GCCAGACGTT GGCGTGGCCA AGGCAGACGC GAAAAACAAC
GTTATTTTAA GAGCTAATCC AAGAGCTACT GCAGATAAAG CGTCAACTCA GGGGATTGAA
AAAGTGTCTC TGGATAATGC TAGTACCACG GGCGAACCCG CTGCAACCGT GTCAGATGGG
GCATTGGCGA ACAAACCCAA GCGCCCAGTA GAGCCACTTC AATCCGTCGC TATGGACAAA
GAAGAAGCCA AACCTGTGCT ACCTTCACCT TCAACTTCAC GTTCAACTCC GCCTTCAACT
TCTACGCCTG TGAAGAGTGA ATGGCTGCAA CCTCAGTTTG ATGATTCCCA GTGGCCGCTC
ATGAATCTAG CGTCTATGGA AGGGGCTGCT ACAGGTGAAA CTCTGATCGC TCGAAAGCAC
GTGCACTTCG CAATTGACCC AGAAGTGGTG AGTTTAAGTG TCGGAAAGGC AAATCAAATC
AAGCATATTT ACATCAACGG AAAGGCACTC AATAGCCAAG ATTGGCAGTA TAATCCGTTA
AAGATTGCTA TACCCAGTGA GCTATTTCGA TCAGGCGACA ATGTTATCGC CTTGGTGTCT
CACCAACAAT GGGACAACAC CCAGTTAATT GGTAAATCTG CTCGCTTTAA CCTCAATATT
GACCAATTCA GTCTAGAGCT GTCCAGCAAC TGGAGCATAT TTCAAGCGGG GAAATAA
|
|---|
| Protein sequence | MISLREIKFL VSGRLKAFAA VLLIATVTTA AQAAQRVSEA STARLTAQLS TQLTAQLIVG
ESVPAYKAIA LKGLGPEGGT VDVKLLKDGT TVTMARAHIN TQGQWQVSLA QQPPGGPYQF
LISDGEQTQY LHDIYVGNAE PSMRNPKGDI ILSTRLSDNM LLQPGEKINV GGLAEPGRTV
DIKLIKEQET YTMARVQAGS NGLWHVTMPG QKAGGPFKLT VTDSTHFKTV NGIIIGHADV
KKVTPVKPDV GVAKADAKNN VILRANPRAT ADKASTQGIE KVSLDNASTT GEPAATVSDG
ALANKPKRPV EPLQSVAMDK EEAKPVLPSP STSRSTPPST STPVKSEWLQ PQFDDSQWPL
MNLASMEGAA TGETLIARKH VHFAIDPEVV SLSVGKANQI KHIYINGKAL NSQDWQYNPL
KIAIPSELFR SGDNVIALVS HQQWDNTQLI GKSARFNLNI DQFSLELSSN WSIFQAGK
|
|---|
| |