| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3481 |
|---|
| Symbol | |
|---|
| ID | 4175260 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 4180581 |
|---|
| End bp | 4181126 |
|---|
| Gene Length | 546 bp |
|---|
| Protein Length | 181 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638056510 |
|---|
| Product | oligoribonuclease |
|---|
| Protein accession | YP_663037 |
|---|
| Protein GI | 109899782 |
|---|
| COG category | [A] RNA processing and modification |
|---|
| COG ID | [COG1949] Oligoribonuclease (3'->5' exoribonuclease) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.122162 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGTGG ATGCACAAAA CCTTGTTTGG ATTGATATGG AAATGACGGG ATTGCATCCT
GAAGTAGATG TGGTGCTAGA AATAGCCACT ATCGTGACGG ACGCCAACTT AAATATATTG
GCTGAAGGGC CGGTACTTGC GATCCACCAA TCTGACGACG TGCTCAACAA CATGAACCAA
TGGTGTATCG ACACCCACGG CAAATCGGGA TTAACCGAGC GCAGCCGTAA AAGTACGGTA
GACGAGCAGA CCGCAGTGGC CGAAACCATC CGCTTTCTCG AAAAATACGT GCCTAAGGGG
GCTTCGCCAT TATGCGGTAA TACCATAGGT CAAGACCGCC GCTTTATGGT GAAGTATATG
CCGGAGCTTG AAGACTACTT CCACTATCGC AATATTGATG TAAGCACCCT AAAAGAATTA
GTTAAGCGCT GGAAACCAGA AGTATTAGAA GGTTTCAGCA AGAAAGGCGT GCATTTAGCA
CTAGATGACA TTCGCGAGTC GATTGCAGAG CTCGTGTTTT ATCGTCAACA CATATTCAAT
ATTTAA
|
|---|
| Protein sequence | MAVDAQNLVW IDMEMTGLHP EVDVVLEIAT IVTDANLNIL AEGPVLAIHQ SDDVLNNMNQ
WCIDTHGKSG LTERSRKSTV DEQTAVAETI RFLEKYVPKG ASPLCGNTIG QDRRFMVKYM
PELEDYFHYR NIDVSTLKEL VKRWKPEVLE GFSKKGVHLA LDDIRESIAE LVFYRQHIFN
I
|
|---|
| |