| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3373 |
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| Symbol | |
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| ID | 4175150 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4046237 |
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| End bp | 4048237 |
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| Gene Length | 2001 bp |
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| Protein Length | 666 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638056404 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_662933 |
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| Protein GI | 109899678 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAATAC GCAGTTACCT GGCTTTACTT GTTTGTGCCT GCTTGCTGGG TGCATATGTT
TTAGAGCAGG TGCTCGCTTA TCGTTTTAAC AATGTACAGA CCCTAGCCGA AGAGCATAGT
AAAAGCCTAC TTTGGGAGAA AGATTTACAG CGAATTGAAA GCACCGCCTC CCAGTTTTTA
GTGTCATCTG ATTTAGTGAT TGGCTCCGGC AATACCTACC TTATATTCGG CGCCAAAAAC
ATGGGGCAGT ACCTCGTAGA TGAGCTAGAG GTAATGCAAT CCGATGTGCG ATTCCCTGAG
CTCACTTCCA AAATATATGA ATCTCAATCT TTTGTTAAAA ATATTATCGG TACACTGGAT
ATAGTTTCAG ATCTTCCGCC GAGTAATTTA CAACTGAGCT TGAGTAAATT GCTCAATCAA
TATGACCCCG TGAGTTTGAC GCTATCCCGC AACATTCAGT TTTTAACCCA AAAAACCGCC
GAACTGATTA AACTGGAGGC AGTACAGTTA GAAAACGAAA AACAGCGTAT GGTAGAAGTA
AGCTGGGTGA CGCGCATTGG CTTTTTTCTG CTAATAATCG GTCTATGGTG GTGGGCTAAC
AATCGCATCT GTAAACCCCT GAACGGCCTA ATTTATTCAT CGCACCGCGC CCTTTCAGGT
CATGATTTTG AAGCTTCTAA AAAGGCACCT ACAGAAATTT TAGAGCTGAG CAACGACTTT
AAGCATTTAA CCGAGACGCT GTTTCATCAA GCGTCTCACG ACCCTCTCAC CGAGCTACAA
AACCGAAGGG CGTTTGAGCG TAATCTCCAT GAGATAATGG ACGACAGAAG GCTTAGCTAC
TTTTTGTGTT TTATAGACCT AGATTACTTT AAGACGATCA ATGATACATG CGGTCATGCT
GCTGGGGACG AAATTCTGGT TAAGGTCGCC CGTATTTTAA AAGCCAATGT GAGAAGCAAC
GACATAGTGG CGCGCTTAGG AGGCGATGAA TTTTCAATTT TAATTAAAGA CTGTCCGTTT
GATAATGCAT TGCAAATTGC CAATAATATA AAGGAGAATA TTCGGGGCTT AACATATCAC
TGGGAAGGTG AAACCTTTCA CCTCAGCGCC AGTATCGGCG TAGCACCTAA AGTGCATGGT
AGTACGACCA CTGAGCTGCT CAATTCAGCT GACGTTGCTT GCGGGATAGC AAAAAATGCT
GGGCGTAATA CAGTGCATTT ATATGATGTG AGCAATGAAA CGGGCGTCAA CAAGCGCCAA
GACATATTAT CCGTTCATCA AATCAACAAC GCCCTCAAAA ACGATCTTTT TGTCCTATAT
AGGCAAGACA TTATACCGCT ACAACATACT CAGCAGGATC AGCATTTTGA GGTCTTGCTG
CGCATGAAGG GCCCAGATGA CACCATTATC AGCCCTGCAC GTTTTTTCCC CATTGCTGAG
CGTTACCGCC TTACCAGCAA GATAGATCGC TGGGTGATTA ACGCTTTATT TACCCATTAC
GCCGATAACA AAAAGCAGCT CGACAGTATC CATACGATTT CAATTAATCT GTCAGGTCAC
TCAATGAATG ACAGAGAGTT AGAGCAGTTT ATTATGACTA AAGTAAAAAG CGGGCTTATC
CCAGCGACAA AAATATGTTT TGAAATAACG GAAACGGTCG CAATCACTAA TGTTAAGCGA
GCAAGATTGT TTATGGATAA CATCAAGGCA CTTGGGTGCA GTTTTGCTCT GGATGATTTC
GGCAGCGGAC ACACTTCTTA TACCTACGTA AGGGAACTTC CCACCGAAAA AATTAAAATC
GACGGCTCTT TCGTTTCATG CATGATGGAA AACCCTCTTG ATTACACAGC GGTTAAATCT
ATTTGTGATA TTGCTAAAGC GGCAAAACAG GACGTTATCG CTGAATGTGT TGAAGATAAA
AAAACGATGG AAGCACTGAA GAAGCTCGGT GTGGATTACG GGCAAGGTTA TTATTTTTGC
CATCCTTATG CTCTTGTCTA G
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| Protein sequence | MRIRSYLALL VCACLLGAYV LEQVLAYRFN NVQTLAEEHS KSLLWEKDLQ RIESTASQFL
VSSDLVIGSG NTYLIFGAKN MGQYLVDELE VMQSDVRFPE LTSKIYESQS FVKNIIGTLD
IVSDLPPSNL QLSLSKLLNQ YDPVSLTLSR NIQFLTQKTA ELIKLEAVQL ENEKQRMVEV
SWVTRIGFFL LIIGLWWWAN NRICKPLNGL IYSSHRALSG HDFEASKKAP TEILELSNDF
KHLTETLFHQ ASHDPLTELQ NRRAFERNLH EIMDDRRLSY FLCFIDLDYF KTINDTCGHA
AGDEILVKVA RILKANVRSN DIVARLGGDE FSILIKDCPF DNALQIANNI KENIRGLTYH
WEGETFHLSA SIGVAPKVHG STTTELLNSA DVACGIAKNA GRNTVHLYDV SNETGVNKRQ
DILSVHQINN ALKNDLFVLY RQDIIPLQHT QQDQHFEVLL RMKGPDDTII SPARFFPIAE
RYRLTSKIDR WVINALFTHY ADNKKQLDSI HTISINLSGH SMNDRELEQF IMTKVKSGLI
PATKICFEIT ETVAITNVKR ARLFMDNIKA LGCSFALDDF GSGHTSYTYV RELPTEKIKI
DGSFVSCMME NPLDYTAVKS ICDIAKAAKQ DVIAECVEDK KTMEALKKLG VDYGQGYYFC
HPYALV
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