| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3360 |
|---|
| Symbol | |
|---|
| ID | 4175137 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 4028176 |
|---|
| End bp | 4030533 |
|---|
| Gene Length | 2358 bp |
|---|
| Protein Length | 785 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638056391 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_662920 |
|---|
| Protein GI | 109899665 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.400189 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAACA AAAGCGTATT GATTAAACCA TCTTTGCAAA TGCGGATGTC TTTCATATTT
TTGCTCTTGC TCAGTATTAT CGTCGTGGTA ACCATTTATT TCGTTCAGCA AGCCACGTTC
AAACACGCTA GTGCTCAACT AATGAATCAT ATTCAAACTT CTGCTGCGGT CGTTCAGGAC
AATGTGGAGG GACGAGCCAG TGCGCTAGAT AACGGAATGG CCACACTCGC CAAAGATTTC
AGCATGAAGC AACTCATAGC AACAGCTAAA AATGATCAAC GCTCATTAAG CTCCGCTATG
TCAAACTACC AGAGCCGTTT AGGAGCAGAT ATCTACTGGG TTTTGAGTAA GGACTTCACA
CCACTTATTG AAGCGCATTC GCCGTTTGAA AATAGCAAGC AAGTCGTTCC TGCTTTCTCC
AAAGCAGCGT TACATTGGTT TACTTACCAA GGGCGTAACT ACCTTATGCG CTCAACACCT
GTGCGCTTTG TCGAAACGTC AGGCCATATC AATGCTTGGG TCGTGATGGG GATTGATGCA
AAGAAATTGT TCACACCACA TCTGGTGGAT TTAACCGATA TGCAAATATC ACTGTTCGGT
GGCAATGCCA GTGTGCTGTT GGGAGCGACC CCTGAAGCGC ATTTCGTCGC GGGCCAAAAG
CAAGGTGAAA TCGCTAAAAC GCGAGGGCTT CACAGGCTAC CATTAAATTC TACCAGCATC
ATTTACAGTG CTTTTGAGCT TGGCACTTGG CAAGGGGAAT CGGCTTTTAT TGTATTGTCG
ATGGACGAAG ATGATGCGTT TCTTTCTAAT GAAAGTTTAA TTGGTCAATT AATCTTCATT
TTGTTGGCCG CTGCCGCGCT GGGTTTGTTA GGTGCGACAC TGCTATCACG CGAAATTACC
AAGCCATTGA AGCAATTGAT AGATGCAGCG CGCAGAATGC GTGCCGGTGA GAATGTTGAT
AGTTTTCCTA GTGCAAACAC TCGAGAAGTA GAAACGCTTT CCAGCGCCTT TAGTGATATG
CAACTAGGTA TCCAAGATCG TGAAGCGCAA ATTCACCAAC TGGCATATTT TGACGAGCTA
ACTCATATCC CAAACCGCAT CCAGTTTTCT AACCATATCA GCGACATGAT CAGGCAAGCA
CCAGAATGCG AGTTGATCGT GTTGATGATA GATGTAGACC GATTCAAAGA GATAAACGAT
ACCCTAGGTC ATGATTTAGG CGACGAACTG CTTATTGCCA TCGCCAAGCG TTTACATAGT
CATACGCAAA ACAAGGGTTT CTGTGCGCGA TTAGGGGGAG ATGAATATGC TTGGGTCGGC
CTTCAAGAGG CCAATACACG CCCGCAAGAT GTGGCTCAAA ATCTCCTGAG CGTGTTCGAG
CAGCCTTTTA AGATAGAAAA TCTAGTACTA GATGTGGACT GCTCAATGGG AATTGCCCTT
TATCCACAAC ACGCTTCGTC GCTGCAAGGG CTTATGCAAT GTGCTGATAT TGCTATGTAC
AGTTGTAAAG ATCAGCATAA TCCATTCGCC CTTTATAATG ATGCACTTAA CAAGCACTCA
GTGGTTCGGT TGAGCCTGAT GTCACAGCTT AAAGGCGCGT TAGGCGAGGG ACAATTAGAG
CTGCATTACC AACCGAAGTT AACCATCGCG AGCGACAAAA TAGAGACGCT GGAATGCCTA
ATACGCTGGT TTCACCCTGA ACATGGTTTC GTTCCCCCTG ATGATTTTAT TCCACTAGCC
GAGCAAACAG GCGCTATTCG CCACGTTACC CAATGGGCAT TAAGAACAGC GTGTGAGCAA
GTCAAACGAT GGCGTGATAA GAACATATGT TTTTCCGTGG CAGTGAATAT TTCAGCGATC
GATTTAGTTG ATTTATCGTT ACCAGCGAGC ATTGAATCTT TGCTCAATGA GTTTGATTTA
CCCCCCAGTG CATTGACAAT GGAGGTGACT GAAAGCGCGG TTATGGGCGA TCCAGAAAAT
GCCCTTAAGG CATTAAACCT GCTCCGAGAT ATGGGGGTTA CCTTGTCTAT CGATGACTTT
GGTACGGGGT ATTCTTCGAT GGCTCAATTG AAAAAAATGC CGGTAGATGA ACTCAAAATT
GATAAGGCAT TTGTACTTGC GCTAGCCACA AACCAAGAAG ACAGAGTGAT GGTGAAAACG
CTAGTCAGCT TAGCGCAAAA TTTAGGGCTT ACAACCGTAG CTGAGGGAGT TGAAGACCTT
GAAACGTTAG AATTTTTAAG AGAAGTCGGT TGCACCAAGG CGCAAGGCTA CTATATGACT
AAGGCATTGC GCGCTGATGA ATTAATCTCT TGGTATGAAA TGTTTACCGA GCAGGGATTG
GCTTCGTGCT CACAATGA
|
|---|
| Protein sequence | MSNKSVLIKP SLQMRMSFIF LLLLSIIVVV TIYFVQQATF KHASAQLMNH IQTSAAVVQD
NVEGRASALD NGMATLAKDF SMKQLIATAK NDQRSLSSAM SNYQSRLGAD IYWVLSKDFT
PLIEAHSPFE NSKQVVPAFS KAALHWFTYQ GRNYLMRSTP VRFVETSGHI NAWVVMGIDA
KKLFTPHLVD LTDMQISLFG GNASVLLGAT PEAHFVAGQK QGEIAKTRGL HRLPLNSTSI
IYSAFELGTW QGESAFIVLS MDEDDAFLSN ESLIGQLIFI LLAAAALGLL GATLLSREIT
KPLKQLIDAA RRMRAGENVD SFPSANTREV ETLSSAFSDM QLGIQDREAQ IHQLAYFDEL
THIPNRIQFS NHISDMIRQA PECELIVLMI DVDRFKEIND TLGHDLGDEL LIAIAKRLHS
HTQNKGFCAR LGGDEYAWVG LQEANTRPQD VAQNLLSVFE QPFKIENLVL DVDCSMGIAL
YPQHASSLQG LMQCADIAMY SCKDQHNPFA LYNDALNKHS VVRLSLMSQL KGALGEGQLE
LHYQPKLTIA SDKIETLECL IRWFHPEHGF VPPDDFIPLA EQTGAIRHVT QWALRTACEQ
VKRWRDKNIC FSVAVNISAI DLVDLSLPAS IESLLNEFDL PPSALTMEVT ESAVMGDPEN
ALKALNLLRD MGVTLSIDDF GTGYSSMAQL KKMPVDELKI DKAFVLALAT NQEDRVMVKT
LVSLAQNLGL TTVAEGVEDL ETLEFLREVG CTKAQGYYMT KALRADELIS WYEMFTEQGL
ASCSQ
|
|---|
| |