Gene Patl_3239 details

Gene Information

• Locus tag: Patl_3239
• ID: 4175016
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: -
• Start bp: 3888808
• End bp: 3889458
• Gene Length: 651 bp
• Protein Length: 216 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 638056270
• Product: ABC transporter related
• Protein accession: YP_662799
• Protein GI: 109899544
• COG category: [G] Carbohydrate transport and metabolism; [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1134] ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATAAGGC TGGAAAACCT AACTAAATAC TACCCCTCAC ATTTGGGTAA GCAGTATATT 
TTTAAGGATC TCAGTTTTGA TATTCCCTCA GGCCATAACA TTGGCATACT GGGTTCAAAT 
GGGGCGGGCA AATCAACCTT ATTCAGATTA TTGGCAGGAA GCGAATACCC CAACAAAGGA 
AAAGTTTTAA CCGATCTTAG TTTATCTTGG CCTGTGGCGT TAACCACAGG AATACATCAA 
CAAATGACCG GGCGCGAAAA TACCCGTTTT ATTGGCAAGG TAAATGGTAT CGCAGACTTA 
GATACTTACG AACGCAGAGT CAGAGAATTT GCGGAGCTAG GGGATAAGTT CGATCTTCCG 
GTAAGAAGTT ACTCCAGTGG CATGAAACCA CGTCTTGCAT TCGCCTGTTC AATTGCAATT 
GATTTTGACG TCTACCTCAT TGATGAAGTG ACCTCGGTAG GGGATGCCAA ATTCCGTAAA 
AAAGCCAGAA AAGCACTGTT AGAGCGCAGC GAAACTGCAA ACGTTGTTAT GGTCAGCCAT 
GAAATGAACG AAATCAGACA ATTTTGCGAC AGCGCTATTG TGTTACACAA GGGTGAACTA 
ACTTTTTACA ATGATCTCGA GGAAGGGATC AAACAATATC AGGCGTTATA A 

 

Protein sequence

MIRLENLTKY YPSHLGKQYI FKDLSFDIPS GHNIGILGSN GAGKSTLFRL LAGSEYPNKG 
KVLTDLSLSW PVALTTGIHQ QMTGRENTRF IGKVNGIADL DTYERRVREF AELGDKFDLP 
VRSYSSGMKP RLAFACSIAI DFDVYLIDEV TSVGDAKFRK KARKALLERS ETANVVMVSH 
EMNEIRQFCD SAIVLHKGEL TFYNDLEEGI KQYQAL