Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3236 |
Symbol | |
ID | 4175013 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 3884106 |
End bp | 3886241 |
Gene Length | 2136 bp |
Protein Length | 711 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638056267 |
Product | type II and III secretion system protein |
Protein accession | YP_662796 |
Protein GI | 109899541 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.284362 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTTTCA AATACCCCAT TACTTTTCAC GGCTGTAATA GGCAGTTGAG TCTCGCACTC ATCACGGCTT GCCTAGCAAG TTGCGCTAAC TTGAAAGGAG CAGGATATGA GGCAGCCCAA CAAGATGACG TTATATTCAG CCAACCCATG CGCCCTCCGA AGACGCTACC AGATTCAGAT GTATATGTGC CATTAGACAA GACGATCGAA GCTCAAGAAA CAATAGACGT TTTAACGGCC CCAAATATCA ATTCGAACGT AGCTGCAGTA AAAGCACGTG AAGCTGTTAT GCCAGAATTG AGCAGTGAGC TGGTAAATCG TCTCACCTTC AATAACATGC CAATCCCTGT ATACATTAAT GAAATTTTTG GTAATCAATT AGGACTCAAT TTTGTTATAG AGCCCAGTTT GAAGAATGCT GAAGACCTTG TCACCATGCG CCTCAATCAA GCGGTAGACC AAAAGAACTT ATACGAGCTC GCTACTCAAA CATTAAAGTC TTACGGCGTC ACAACATCAA TTAAAAACAA CGCAATTTTA TTCTCATTTT CTGAAAATGC TGGTAATGAA ACCCCATTAT TAATAAGTGG TCGCACTCTA CCAGAAGTTC CGTCTAATAG TCGCCCACTT TTTTATGTAT ATCCTCTTCA GTCTGTTACC ACGCCCATGA TCCGAAGCTG GCTTTCTCAG ATGTTTCCAA AAAAAGAGCT TGAGATAAAA GAAGATATTT ATCAAAACGC TTTGATATTT ATTGGCCCGA ATCGGGCGAT AGAACAAGCC GTAGCCGCAG CAAAATTGCT CGACAAACCC GCTATGCAAG ACATGTTTAG CCGTATTATT CGACCTACGC TAAGCGACGT AAATGATTTA GCAAATAACC TAGAAAATGT ATTGAAAGCG GAAGGCTATG CAGTTAGGCA ATCCGATGGG GCGTCAGCAA TTCGTCTATT AGCCTTGAGT TCAGTTAATC AATTAGTGGT ATTCGCAAAA TCTGAAAACG TTTTAAACCA CGTTATAGAT TGGGCTAAAA CGTTAGAAAC CGAGCAGCAT AAAAAAGTTG ATAAAGGTTT ATTCAGTTAC CCTGTGCAGA GTACCCAAGC TACACATATT GTAGATATAT TAAATAGCTT GGGTGTTGCA GACTATAAAA GTAATAATTC AGATAAAAGC AACACAACAA ACTCAAATAA CTCAGCTCCT CGCACCTCCA ACTATCCCGA TGCACTCGAA GAAGATGTAA AAGGACGTTA CGCCGTAGAT GAGCAATTAA ATACAATATT GTACAGTGGT AGTGGCAAAG ATTGGCTGCA GATATTGCCC GTAATAAAGA AACTCGATAA GCCCGCTGCC TCTGTTATGG TTGAAGTAAT ACTTGCTGAA GTTCAATTAA ACGATAGTGA AGACACTGGT GTGGAGTGGC TAGCAAACTC ATCATTAGGA CGTTTTGGGA TTACAAGCAG CACCATAGGT GGTCTAGGGC TTGGCGCCAG CGGCTTTAAT ATGACGTTAG ACAGTGCGGG ACAGACTCGA GCCATGTTGA ATCTGTTTTA TAAAAACGAG AAGGCCAATA TACGTTCCAG GCCAAGGTTA ATGGTAAAAA GTGGTGGTGA AGCGTCGATC GATGTGGGGA ATGAAATTCC GGTCATTACC TCCAACAGCC AAAGCACCAC AGATTCAGAT GCCGTAGTAT TACAGACCAT TTCTTATCGT AAAACGGGCG TATTGTTAGA GGTAAAGCCA ACTGTACACG CTTCAGGCTT TGTAGACATT GAAATTACTC AAGAGTTGAG TGAAGCCACT GAAACCTCAT CGAGTGATAT CGATTCCCCT ACTATCTTGA ACAGAAAAAT CAGTACCACG GTTACTTTAA GGGATGGAGG TTCAGTGCTA CTTGGTGGTC TTATTTCCTC CACGACAAGT ACAGGTACTC AAGGGGTACC AATATTAGGT AGATTACCAA TGATTGGTAA GTTGTTCAGT ACAGATTCAA ATGCCCAGGA TAGAACTGAG CTGATGATTA TGATTATTCC GTATATTCTA AATTCACCTG ATGAAGCAGA ACAGTTAACA GATGAGCTAC AAAAAGCCAG AATTGATAAG TTGTCTGATG GCATGGTAGG TAAAAAGCGG CCTTAA
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Protein sequence | MFFKYPITFH GCNRQLSLAL ITACLASCAN LKGAGYEAAQ QDDVIFSQPM RPPKTLPDSD VYVPLDKTIE AQETIDVLTA PNINSNVAAV KAREAVMPEL SSELVNRLTF NNMPIPVYIN EIFGNQLGLN FVIEPSLKNA EDLVTMRLNQ AVDQKNLYEL ATQTLKSYGV TTSIKNNAIL FSFSENAGNE TPLLISGRTL PEVPSNSRPL FYVYPLQSVT TPMIRSWLSQ MFPKKELEIK EDIYQNALIF IGPNRAIEQA VAAAKLLDKP AMQDMFSRII RPTLSDVNDL ANNLENVLKA EGYAVRQSDG ASAIRLLALS SVNQLVVFAK SENVLNHVID WAKTLETEQH KKVDKGLFSY PVQSTQATHI VDILNSLGVA DYKSNNSDKS NTTNSNNSAP RTSNYPDALE EDVKGRYAVD EQLNTILYSG SGKDWLQILP VIKKLDKPAA SVMVEVILAE VQLNDSEDTG VEWLANSSLG RFGITSSTIG GLGLGASGFN MTLDSAGQTR AMLNLFYKNE KANIRSRPRL MVKSGGEASI DVGNEIPVIT SNSQSTTDSD AVVLQTISYR KTGVLLEVKP TVHASGFVDI EITQELSEAT ETSSSDIDSP TILNRKISTT VTLRDGGSVL LGGLISSTTS TGTQGVPILG RLPMIGKLFS TDSNAQDRTE LMIMIIPYIL NSPDEAEQLT DELQKARIDK LSDGMVGKKR P
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