Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3220 |
Symbol | |
ID | 4174997 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 3868384 |
End bp | 3870405 |
Gene Length | 2022 bp |
Protein Length | 673 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638056251 |
Product | glycosyl transferase, group 1 |
Protein accession | YP_662780 |
Protein GI | 109899525 |
COG category | [S] Function unknown |
COG ID | [COG3551] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTATTA ATACACCGCG TTCGTGTGTC GTCGTTTTGG GCATGCACCG CTCTGGCACG TCAGCCTTGG CCAAGACGAT TTGTGATATG GGATTCGAGC TGCCATCTGA CTCGATGCCT GCTCATCATG TGGATAACCC AAACGGTTAT TTTGAAGCGA AAGAACTGGT TCAAATCCAT AACCGTTTCT TGGACAGCGT GGGCTTAAAG TGGAATGCCA TTGAGCCCAT GCCATTGCAT GTATTCGATG GGGAAAGCGC CAAGCAGGCC AAAGCAGAAT TATCAGCTTT ATTGGGCTTT GCCTTTGAAC AAAAGCCACA ATTGGTGCTA AAAGATCCTC GATTATGTCG CCTTTTCCCC CTGCTTTTGC CCGTGTTAAA AGCGTTAGGC TCGCAGGTTT CTGTCGTGTT CATTGTGCGC GATGTAGATG CGGTTTATCA ATCTTTGGCA AAGCGTCAGC ATACCCCTGA AATTGCTCCA GCTGCGATTA CCGACACGCA GCATGTAGAG CTTTTATGGC TGCGGCATAA CCTAGAGGCT GAGCAACATA CCAGAGGCGT TAACCGCTTT TGCTTTAGTT ATGAAGATTG GTTAAATGAT ACACAGACGA TAAACACAAA AATACGGCAC TTTTTGCAAG ATACTTTACC CAATGCGAAC GTGTTAAGCC CGCCAGTATC AGTCAAAAAA CCGCGGCATT ATGCACTGTC CGGTAAGCTG TTAACTGATT TAACTCGAGT CAATAGTTCC ATTTATGCTG CGCTTGCTGG CCGCGCTTCT ATTGACGATA TCAATAACTG GTTTGATACG CTTTATGCGG TTTCTAGAAC CGCGATACCA CAGCAATGCG AAGTGGTTAA TCACGCTCCG CCATTTTCGG TGAAACTCGC TGCTTATATT AAACTGTTAA CCGCTCAAAG CGCGGTCGAT GTGACTCTAC TTGGTAACAG TGAGAAGGCA AAGAATGCTT ATGTATTTAT TAGTGCAACG CCCGCTACCC GCAGTCACAT TTACCGTGTT AAAAATCCAG TAGATGCGTT AATTAAAGAT GGACAACAGG CTTTTTGGAG CACACCAGAA GGTATGTTGC CTCATGTGAA TTTACTCAGT ACAGCAAAAA GGGTGATTAT TCATCGCTGT GAGTGGAGCC AAGCGTTAGC AAATATTACG CAAGTGTGCA GAGAAAATGA TGTATTGGTT AGCTATGACA TTGATGATCT AATTATTGAT CGAAGCGTTA TCGAAGCAGG TTACATTGAT TTTATTACCA GACAAAGCCT GCAAGAGAAA CAAGCGTGGT TAACCAAAGC TGATAGCTAT TATCGCGCTT TAGCCTCGTG TGACGAGGTT CTTTGCAGCA CCCCAGCCCT AGCACGACAC ATTCAAGGTA TGGGCCACTC CTGTAAAGTT GTGCCGAATG GTTTTTCCCC CGAGACCCAG CTAATTAGTG AGCATTGGCG ACAATATGAA GAGCAATGTT TGCAGCCTGA AAAACGTATT GGATATGCCA GTGGTACACC GACGCATAAT GCGGATTTTG CTACTATAGT GCGCCCTTTA GGGATGTGGT TGCGGGAAAA TCCGGACTGG ACCTTCACTG CCATTGGTTA TTTGCAGCTG GATGCGTTGC GTGAAATGGT ACCTGAAAAA CAAATTGAGT CGCGGCCATT AGTGCAACAT TGTAACTTAC CGTACGAGTT ATCGCGTTTA AACATAAACT TGGTTCCGCT GCAACGTAAC CCATTCTGTG ATGCTAAAAG TCCACTGAAG TGGTTTGAAG CCGCACTATG CGGCACCCCC TCAATTGTCG CGGACAACCC AACCTATCGA CGGATATTTA GTGCAGCTGA TACATGTGTT GGTTTGTTGG CAGATAATGA AGGCGACTGG GCAGCGCATA TTAATACGTT AGCGACCTCA GCTGAGGCTC GAAAACAGAT TGCTAACGCT GCGCGAAAGC GTTGCCACCA GATTTTAAAT AGTGCAGTAC TTAGTCAGCA ATATACATTA GATGGGGAAT AA
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Protein sequence | MAINTPRSCV VVLGMHRSGT SALAKTICDM GFELPSDSMP AHHVDNPNGY FEAKELVQIH NRFLDSVGLK WNAIEPMPLH VFDGESAKQA KAELSALLGF AFEQKPQLVL KDPRLCRLFP LLLPVLKALG SQVSVVFIVR DVDAVYQSLA KRQHTPEIAP AAITDTQHVE LLWLRHNLEA EQHTRGVNRF CFSYEDWLND TQTINTKIRH FLQDTLPNAN VLSPPVSVKK PRHYALSGKL LTDLTRVNSS IYAALAGRAS IDDINNWFDT LYAVSRTAIP QQCEVVNHAP PFSVKLAAYI KLLTAQSAVD VTLLGNSEKA KNAYVFISAT PATRSHIYRV KNPVDALIKD GQQAFWSTPE GMLPHVNLLS TAKRVIIHRC EWSQALANIT QVCRENDVLV SYDIDDLIID RSVIEAGYID FITRQSLQEK QAWLTKADSY YRALASCDEV LCSTPALARH IQGMGHSCKV VPNGFSPETQ LISEHWRQYE EQCLQPEKRI GYASGTPTHN ADFATIVRPL GMWLRENPDW TFTAIGYLQL DALREMVPEK QIESRPLVQH CNLPYELSRL NINLVPLQRN PFCDAKSPLK WFEAALCGTP SIVADNPTYR RIFSAADTCV GLLADNEGDW AAHINTLATS AEARKQIANA ARKRCHQILN SAVLSQQYTL DGE
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