Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3135 |
Symbol | clpX |
ID | 4174908 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 3778354 |
End bp | 3779631 |
Gene Length | 1278 bp |
Protein Length | 425 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638056162 |
Product | ATP-dependent protease ATP-binding subunit ClpX |
Protein accession | YP_662695 |
Protein GI | 109899440 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1219] ATP-dependent protease Clp, ATPase subunit |
TIGRFAM ID | [TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000469456 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTGATA AGCAAAGCGG AGATGGCGAT AACAAGCTAC TTTATTGTTC TTTTTGTGGG AAAAGCCAGC ATGAAGTGAG AAAGCTCATC GCTGGCCCGT CAGTTTTTGT ATGCGATGAA TGCGTTGAAT TATGTAATGA CATTATTCGC GAAGAGATCA AAGAAATCGC TCCGAAGCAA AAGCAAGACG AGCTTCCTAC ACCGAAAGAG ATCCACAGTC ATCTGGATGA TTATGTCATC GGTCAAGAAC ACGCCAAGAA GGTGCTTTCC GTCGCAGTGT ATAACCACTA TAAACGATTA CGTAATGGTG ACGTGCATGA CGGTGTTGAA CTAGGTAAAA GTAATATTTT GCTAATGGGC CCAACTGGTA GTGGTAAAAC CTTGCTCGCT GAAACACTAG CTCGTTTATT AGATGTTCCA TTTACGATGG CCGATGCGAC TACTCTGACC GAAGCGGGTT ATGTTGGTGA AGATGTAGAG AATATCATTC AGAAGTTATT GCAAAAATGC GACTACGATG TTGAAAAGGC GCAGCGCGGA ATCGTTTATA TCGATGAAAT CGACAAGATC TCTCGTAAGT CAGATAACCC ATCGATTACA CGGGATGTAT CCGGTGAGGG CGTGCAGCAG GCTTTGCTTA AGCTGATTGA AGGCACCATT GCGTCTGTTC CGCCGCAAGG TGGACGTAAA CATCCTCAAC AAGAGTTTTT GCAAGTCGAT ACCTCTAAAA TTCTGTTTAT CTGTGGTGGG GCATTTGCGG GGCTTGATAA AGTCATCGAA CAACGCGCGC ATACAGGCAC CGGTATTGGT TTTGGTACAG CAATTAAAGA CAGCAGCAAC AAGTCGAAAG AAGGCGAGTT GTTGAAAAAA GTTGAGCCGG AGGATTTGGT CAAATACGGT CTAATTCCTG AGTTTATCGG GCGTTTGCCT GTTCTGACCA GTCTTGAAGA GTTGAGTGAA GAAGCACTTA TTCAAATTTT GCGTGAGCCG AAAAACTCTC TTACGAAACA ATATGCGGCT TTATTCTCTT TAGAAGATAC TGAGTTAGAG TTTAGAGAAG ATGCTTTGCA AGCGATAGCT AAGAAAGCGA TGTCACGTAA AACAGGTGCT CGTGGTCTGC GTTCAATTGT TGAGGCAGTG TTACTCGACA CGATGTACGA GTTACCTTCT ATGTCGAACG TAAGCAAAGT GGTAGTCGAT GAAACTGTCA TTCGTGGGGA ATCAAAACCG ATTCTAATTT ACGATAGTGC AGCGGATAAA AAATCCATTT CGGAATAA
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Protein sequence | MSDKQSGDGD NKLLYCSFCG KSQHEVRKLI AGPSVFVCDE CVELCNDIIR EEIKEIAPKQ KQDELPTPKE IHSHLDDYVI GQEHAKKVLS VAVYNHYKRL RNGDVHDGVE LGKSNILLMG PTGSGKTLLA ETLARLLDVP FTMADATTLT EAGYVGEDVE NIIQKLLQKC DYDVEKAQRG IVYIDEIDKI SRKSDNPSIT RDVSGEGVQQ ALLKLIEGTI ASVPPQGGRK HPQQEFLQVD TSKILFICGG AFAGLDKVIE QRAHTGTGIG FGTAIKDSSN KSKEGELLKK VEPEDLVKYG LIPEFIGRLP VLTSLEELSE EALIQILREP KNSLTKQYAA LFSLEDTELE FREDALQAIA KKAMSRKTGA RGLRSIVEAV LLDTMYELPS MSNVSKVVVD ETVIRGESKP ILIYDSAADK KSISE
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