| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3102 |
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| Symbol | |
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| ID | 4174874 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3735329 |
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| End bp | 3736249 |
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| Gene Length | 921 bp |
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| Protein Length | 306 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638056128 |
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| Product | response regulator receiver modulated CheW protein |
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| Protein accession | YP_662662 |
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| Protein GI | 109899407 |
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| COG category | [K] Transcription
[N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG0835] Chemotaxis signal transduction protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.262439 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCTGAAA TAATGAATTC AGTTAACCAG CGAACCCAAT TGGTTGGGCA AAATCGCTTA
GAGTTATTGC TATTCAGATT AAATGGGCGG CAGAAATTTG GTATTAATGT GTTTAAAGTA
CGAGAAGTAC TGCAATGCCC CAAATTAACC TCTATTCCAA AATTAAATTC CTATGTGCGC
GGTATAGCGC ACATCCGCGG GCAAACAATA TCAGTCATTG ATATGAGCAT GGCCACTGGT
GGCAAGCCAA TCATTGACCT AAATTCTGCT TTTGTCGTTA TCGCTGAATA CAATAGCTCG
GTGCAGGGCT TTTTGGTCGG CGCAGTAGAG CGCATCATTA ATACCAATTG GGAGGCGATC
ATGCCGCCGC CAAAAGGTAG CGGCCGCGCG AGTTACTTGA CTGCGGTGAC AGAGTTCGAA
GAAGAGTTAA TTGAGATCTT GGACGTTGAG AAAATTCTAA ATGAAATTTC ACCTATCAGT
ACTGACGTGA GCGATGACGT ATCGAGTATT TCGGTTGAAA ACAAACGTGA GAAGATTATT
TTTATTGCTG ATGATTCTTC TGTAGCGAGA AACCAGGTCA AAAAAGCTCT ATCCACATTA
GGACTAGAAA TAGAAATGGC TAAAAATGGT TTAGAAGCTT TGAATCGTTT AAAAGAGCTG
GCAGAGGAAA CAGGCAACAT CACAGACAAG GTGGGTATTT TAGTCTCTGA TATTGAAATG
CCTGAAATGG ACGGCTATAC CCTAACTGCT GAGATCAAAA ACAATCCAGC TTTACAAGAT
TTGCACGTTG TATTGCATAC ATCTTTAAGC GGAGTGTTTA ACCAGGCGAT GGTGCAAAAG
GTTGGAGCCG ATGATTTTAT CGCTAAGTTT CATCCCGACG AACTAGTGAC CTCTGTGCAA
AAATGGTTTG ATAACAAATA A
|
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| Protein sequence | MSEIMNSVNQ RTQLVGQNRL ELLLFRLNGR QKFGINVFKV REVLQCPKLT SIPKLNSYVR
GIAHIRGQTI SVIDMSMATG GKPIIDLNSA FVVIAEYNSS VQGFLVGAVE RIINTNWEAI
MPPPKGSGRA SYLTAVTEFE EELIEILDVE KILNEISPIS TDVSDDVSSI SVENKREKII
FIADDSSVAR NQVKKALSTL GLEIEMAKNG LEALNRLKEL AEETGNITDK VGILVSDIEM
PEMDGYTLTA EIKNNPALQD LHVVLHTSLS GVFNQAMVQK VGADDFIAKF HPDELVTSVQ
KWFDNK
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