| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3035 |
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| Symbol | fliR |
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| ID | 4174807 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3666882 |
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| End bp | 3667661 |
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| Gene Length | 780 bp |
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| Protein Length | 259 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638056061 |
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| Product | flagellar biosynthesis protein FliR |
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| Protein accession | YP_662595 |
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| Protein GI | 109899340 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
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| TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCGTTTT CCGCCGACAT TATCACTCAG TTCATGGGTG ACATGTTACT GCCATTCATG
CGTATATCGG GCATGTTGGC GACCATGGTT GGCTTGAGTG CGAAAACAGT TCCCACTACT
GTACGCGCTT TATTGACGCT GTTTATTACT TTCATTATTT TGCCTGTTAT ACCGCCTGTG
CCGGTTGTAG AAATACTCTC AGTAAGTACC TTCGTGTTGG TGATCCAGCA ACTTATTATC
GGTATTTCCC TGGGGTTTAT CTCAACCATG GTGCTGAATA CCTTTGTATT GGCAGGGCAA
GTCGTGGCGA TGCAAACAGG GCTTGGATTT GCTTCCATCG TCGACCCAGT CAATGGCATC
AATGTACCCG CGGTAGGTCA GTTCTACTTA ATTCTAGCGA CTTTGCTCTT TTGGGCGCTA
GATGGCCATT TAGCCATGAT CCGTATGGTG GTGATGAGCT TTACTGCATT TCCAGTAGGA
GAAGCGTGGC TTCAGCCAGA GCAATTTAGA GAAATCGCCC ATTGGGCTGG TTGGATGTTT
ATTTCCGCCG TGACCTTGTC TTTAGCGCCG ATTGTATCTT TATTGATTGT TAACTTGGCG
TTCGGTGTTA TGACCAAGGC GGCGCCGCAA TTGAACATTT TTAGTTTGGG TTTCAGTATC
GCGCAAATCA TGGGTTTGGT GATTATCTGG ATCACCATGG ATAATTTCAC TTACCACTTT
GAAGTACAGT GGGATAGAGC TCAGCAAATG ATGTGTCAGC TCGTTAGAGT TTGTCCTTAA
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| Protein sequence | MAFSADIITQ FMGDMLLPFM RISGMLATMV GLSAKTVPTT VRALLTLFIT FIILPVIPPV
PVVEILSVST FVLVIQQLII GISLGFISTM VLNTFVLAGQ VVAMQTGLGF ASIVDPVNGI
NVPAVGQFYL ILATLLFWAL DGHLAMIRMV VMSFTAFPVG EAWLQPEQFR EIAHWAGWMF
ISAVTLSLAP IVSLLIVNLA FGVMTKAAPQ LNIFSLGFSI AQIMGLVIIW ITMDNFTYHF
EVQWDRAQQM MCQLVRVCP
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