| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3009 |
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| Symbol | |
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| ID | 4174779 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 3636602 |
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| End bp | 3637597 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056034 |
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| Product | oligopeptide/dipeptide ABC transporter, ATPase subunit |
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| Protein accession | YP_662571 |
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| Protein GI | 109899316 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG4170] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCTAT TGGATATTAA GAATCTCACC CTGGAAATTG ACTCTCAAAG TGGCTGGATA
AAAGCCCTCG ACAAAATTAA TCTTGTCATT AACGAAGGGC AGATCCACGC CTTAGTAGGC
GAATCAGGCT CAGGGAAAAG CATCATTGTT AAAGCGATTG TGGGCGCCAT TTCGGATCGT
TGGCGTATTA CTGCTGACAG AATGACGTGG CGCGGCCAGG ACTTACTAAA AATGTCAGTA
CGCGAGCGGC GTAAAATTAT CCGCTCGGAT ATTTCGGTTA TTTTTCAGAA CCCTAAAAGC
TCGCTTGATC CCATAGTGAC CTTAGGGGAC CAGTTAAAAG AAGTTATATT AGCCACCCGT
TTAGAAAAAG GCATGTTTTG GAACCGCGCA AAAGCCCGTA AGAAATATGC CTCTGAGCTA
CTCCATCGCG TGGGGATTAA AGATCATGAG GTGTATATGC GCAGCCTACC TCACCAAATC
CCTAATGACG TTTGTCAGAA ATTTATGATT GCCATGGCAC TTGCTTCACA GCCTAAATTG
GTGATTGCAG ATGATCCTAC CCGTGGCATG GAAATAACGG ATAAAAGCCA AATCTTGAAG
TTGCTAAGTC GGGTGAATAA GGTACGCAAA CTAAGCATTC TCTTTGTGAG CCACGACTTA
TTGGCCATCT CCAGTATGGC TGACCATATG ACGGTACTTT ATTGTGGACA GACGGTGGAA
AGCGGACGCA TGTCGCAGTT ACGTAAGCGT GCTTTGCACC CTTACACAAA AGCTCTGTTA
GAAAGCGCCC CTAGTTTTCG CACGGACTTA GCGCCTAAGT CGCCCCTGAG CTCATTAGGA
GGAACAATTC CCTCATTTCA ACATTTACCT ATTGGCTGTC GTTTAGGGCC GCGCTGTCCT
AGGGCTCGCA GAGAATGCGT GAAAGTGCCA GAAGTGCGGC GCATTCATGA ACATACTTAC
AGCTGTCATT TTCCTTTGCA TCGAGACCAG AAGTGA
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| Protein sequence | MSLLDIKNLT LEIDSQSGWI KALDKINLVI NEGQIHALVG ESGSGKSIIV KAIVGAISDR
WRITADRMTW RGQDLLKMSV RERRKIIRSD ISVIFQNPKS SLDPIVTLGD QLKEVILATR
LEKGMFWNRA KARKKYASEL LHRVGIKDHE VYMRSLPHQI PNDVCQKFMI AMALASQPKL
VIADDPTRGM EITDKSQILK LLSRVNKVRK LSILFVSHDL LAISSMADHM TVLYCGQTVE
SGRMSQLRKR ALHPYTKALL ESAPSFRTDL APKSPLSSLG GTIPSFQHLP IGCRLGPRCP
RARRECVKVP EVRRIHEHTY SCHFPLHRDQ K
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