| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2885 |
|---|
| Symbol | |
|---|
| ID | 4174644 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 3497476 |
|---|
| End bp | 3498210 |
|---|
| Gene Length | 735 bp |
|---|
| Protein Length | 244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638055899 |
|---|
| Product | 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase |
|---|
| Protein accession | YP_662447 |
|---|
| Protein GI | 109899192 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0106] Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase |
|---|
| TIGRFAM ID | [TIGR00007] phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTATAC CCGCAATAGA TTTGATTGAA GGCTCTGTGG TTCGTTTGTA TCAAGGCGAC
TATGAGCAAA AAACCAAATA CGAACTGGAC CCCATTGACG TAGTCAATAA CTATGCCGAT
CAAGGCGCTA AGTGGTTACA CATAGTGGAT TTAACTGGCG CGAAAGACAC CAACAAACGC
CAACTAAAAC TGATTGGCGA CATGGTGGCC ACTGGCCGCA TGCAATTTCA AGCAGGCGGC
GGTATTCGTA GCGAACAAGA CGTCGCGCAA CTGTTAGCGC TAGGCGTTAA ACGTGTCGTC
ATTGGTTCAC TTGCGGTGAA AGAGCCTGAG CTGGTTAAAG GTTGGGTCAC TAAGTATGGC
AGTGAAGCTA TCGTACTCGC CCTTGATATC AACATTGACG AGCAAGGTAA TAAATTTATT
GCTACCCATG GCTGGCAAGA AAACTCCGGC GTGTCATTAG AAGCGCTGTT AGAAGACTTT
TTGTCTGTGG GGGCCAAGCA CGTGCTATGT ACTGACATCA GTCGTGATGG CACATTACAA
GGTGCAAATC ATCAATTGTA TAGCGAAATG GCTGCGAAAT TCCCGACCAT TGAATGGCAA
GCATCGGGCG GCATTGGCAA TTTGGATGAT ATCGCCGTCC TTAAACCAAC CCATGTTAGC
GGGGTTATTC TTGGCCGTGC CTTGCTTGAA GGAAAATTCA CCGTCGAGCA AGCGATAGAG
TGTTGGCAAA GTTAA
|
|---|
| Protein sequence | MIIPAIDLIE GSVVRLYQGD YEQKTKYELD PIDVVNNYAD QGAKWLHIVD LTGAKDTNKR
QLKLIGDMVA TGRMQFQAGG GIRSEQDVAQ LLALGVKRVV IGSLAVKEPE LVKGWVTKYG
SEAIVLALDI NIDEQGNKFI ATHGWQENSG VSLEALLEDF LSVGAKHVLC TDISRDGTLQ
GANHQLYSEM AAKFPTIEWQ ASGGIGNLDD IAVLKPTHVS GVILGRALLE GKFTVEQAIE
CWQS
|
|---|
| |