| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2863 |
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| Symbol | |
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| ID | 4174622 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 3472497 |
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| End bp | 3473783 |
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| Gene Length | 1287 bp |
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| Protein Length | 428 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638055877 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_662425 |
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| Protein GI | 109899170 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.201465 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCTATCA GTTATTTTTG GGTTTTCATT CTATTACTCA CTGCTGGCAC GCCAGTGGTG
TTTGCCTTGT TAATTGGTCC TGGCGTCAGT TTAATGCTTG ACGGTAACGA GGTGTTTTTC
TCAGCATTGT TAACCCGTTT GTACTCAGGG ATGAATTCGT TCCCTTTGAT GGCGGTACCG
TTTTTCATCT TAGCTGGTGA GCTGATGAAT CAAGGCGGGA TCACTCAGTC TATTGTGCGC
TTTAGCCAAA CCTTAATAGG GCATTACAGA GGCGGCTTAG CACAAGTGAA TATTTTATCG
TCAGTGCTTT TCGCAGGGCT ATCAGGCTCA GCGGTTGCCG ACACCTCTGC GTTAGGTAAA
ATGCTTATCC CCGCTATGGA AGAAAACGGC TACAGCAGAC GCTTTGCCGC TGCAGTGACG
GCCGCTTCTT CTGTTATCGG CCCGATTATT CCCCCCTCAG GGATCATGAT CTTGTACGCT
TTTATCATGA ACGTATCTGT GGCGGGCATG TTCTTAGCAG GCATTACCCC GGGCTTATTG
ATTTGTGCTG GTTTGATGAT AGTCACCAGC CGAATAGCCA AAAAACGTAA CTACCCAGTA
GCAAATCAAA AAGCGACTTG GTACGAACGT GGCAGTGCCC TTAAATCGTC CTTTTTACCC
TTACTTACCC CCGTTATTTT ACTTGGCGGG ATCGTATTAG GTGTATTCAC CCCAACAGAA
GCGGCCGCAG CAGCAGCGGG TTATGCACTG ATCGTTACCT TATTTGTGAC CAACACCCTT
AAATTCCACA AGCTGCCGCA CATACTTGTT AACGCAGCCG TGCAATCAGG AACAATTTTA
TTACTGGTCG GCTCGGCGGT AACCTTCGCC TGGATCATTA CCGTGTCCGG TATGGCTGAT
ATGTTAGCCG AACAAATCGT CGGCATAACC GACAACGTAT TGTTGTTGCT GCTGATCATT
AACTTATTCT TATTCGCCAT CGGAATGTTT CTAGATGCAG GCCCAGCGAT CTTGATCCTC
GGCCCTGTGC TAGCGCCTAT TTTTATCTCG CTAGGCATCG ACCCTCTACA TTTTGCGGTG
ATCATGTGCG TGAACTTAAC GGTTGGCTTA GCAACCCCCC CTATGGGCTT GGTGCTATTT
GTGGCTGCGT CCGTATCCGG CGAAAAAACC GAAAATATTG CCTACGAAAT GCTGCCATTT
TTAGCAGTTG AAGCCTTGGT GATTTTTATT ATTACCTATT TCCCTGCGGT CACTATGACC
TTACCTCGTC TGTTTGGGTT TGCTTGA
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| Protein sequence | MSISYFWVFI LLLTAGTPVV FALLIGPGVS LMLDGNEVFF SALLTRLYSG MNSFPLMAVP
FFILAGELMN QGGITQSIVR FSQTLIGHYR GGLAQVNILS SVLFAGLSGS AVADTSALGK
MLIPAMEENG YSRRFAAAVT AASSVIGPII PPSGIMILYA FIMNVSVAGM FLAGITPGLL
ICAGLMIVTS RIAKKRNYPV ANQKATWYER GSALKSSFLP LLTPVILLGG IVLGVFTPTE
AAAAAAGYAL IVTLFVTNTL KFHKLPHILV NAAVQSGTIL LLVGSAVTFA WIITVSGMAD
MLAEQIVGIT DNVLLLLLII NLFLFAIGMF LDAGPAILIL GPVLAPIFIS LGIDPLHFAV
IMCVNLTVGL ATPPMGLVLF VAASVSGEKT ENIAYEMLPF LAVEALVIFI ITYFPAVTMT
LPRLFGFA
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