| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2678 |
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| Symbol | |
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| ID | 4174438 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 3261566 |
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| End bp | 3263113 |
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| Gene Length | 1548 bp |
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| Protein Length | 515 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638055696 |
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| Product | diguanylate cyclase with GAF sensor |
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| Protein accession | YP_662244 |
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| Protein GI | 109898989 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGATTA AATTCCAAGA TCGTACCTTA GAAGATAAAA TTCTTCTGGC TATTACAGGC
TCAGCTTCAC TGGTACTCTC CCCTTTTCTC TTGTTGAGCC TTATGGCTGG AGACATCGCT
AATAGTTTGG TAGATGTAGT GGCGGTAGGT GGCATATTTG CCATTTTTTT AGGGGTTTGG
TTCACTAGCA GAATCAAACT GTTAAGCGGG ATATTCGCCT TTGTTGCCCA AGTCACCATT
CTAATAGGGA TACACGTTAA GGGCGCAGGG TTAATTTATT GGGTTTTCCC GATCATTATT
GCCAGCTTTT ACCTCTTACC GACCCTGATC GCTAGCCTGT TTAACTTGGT TTTAATTACC
ATCGCGTGTT TTTTAACGTT TCAACAATTC GATAGCTTCA CACTCCCCCG CATCATTGCA
TCCTTTGTGG TAACGAACAT ATTTTCGCTA ATATTTTCAG TTTTTATGCA AAATAAAAAT
CGACAATTAT CAAACAAAGA CAAAATAAAC CAAATTCACA ATAACATTCT CGAGTTAATC
GCCAGTTCAA GTAAGTTATC TAAAATACTA CCGGCAATTA TTAATGGCAT CGAAAATGAA
ATCCCTAATG CGTTATGCAG CGTGCTACTC GTCGATCGAA AAGGCAGGCG GTTATTGGTT
GGCGCAGCGC CAAGCCTACC GGACTATTAC AATCTGGCTA TTGACGGCCT ATCAATTGGT
CACGGTATTG GCGCATGGGC TGAAGCGGCG TTCTCCTCAA AGCGTGTGGT TGTAAAAGAT
ATTGCTAGTC ATCCGGGCTG GGTGGATTGG ACCGAGTTGA CCCAAAAAGC CCATTTGGCT
TCTTGTTGGT CTGAACCCAT TATTGGCAAC AACGGAAAAG TTTTAGGTAG CTTCGTTATC
TATTTTCAAA AACAATACTC GCCAAAAAAT GACGAACTCA AACTGATAGA GCAATTTGTC
AATCTTACTC GCATCGCCAT TGAGCGAGAA AAAGCGGATA AATTAATTTG GCAACAAGCC
AACTACGACA GCTTGACGTA TCTGCCTAAT CGAAACCTAC TTTACGAACA CCTCGCCAGC
GCAATGACTC AAGCTAATCG AGAGAAAAAA CAGCTTGCTG TTGCCATGTT AGATCTTGAT
AAATTCAAAG CGGTCAATGA CACACTAGGT CACGCTGCTG GGGACATCGT ACTGGTAGAG
TGTTCGAAAC GTATAAAAGG GTGTATTCGC AAAAGTGATA TCGCAGCGAG ACTCGGCGGA
GATGAATTTA TCATCGTCCT GCGAGATGCT ATCTCCCCAG AGGATATTGC GGCCCTGGGG
CGCAAATTAT CAGATGCACT GGCCAAGCCG TATTTTATCC AAGATGAAAG CGTTTACTGT
ACCGCGAGTA TTGGTATTGC GTTTTATCCA AATGATGCTG CTGACATGGA TACACTGCTT
AAAAACGCCG ACCAAGCTAT GTATAAAGCA AAAGCAAAGG GGCGCAACAG CGTCCATTAC
TTCGCTAACC AGTCAATCCC AAGTACTGAG GAAATTGACG CGCCTTAA
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| Protein sequence | MTIKFQDRTL EDKILLAITG SASLVLSPFL LLSLMAGDIA NSLVDVVAVG GIFAIFLGVW
FTSRIKLLSG IFAFVAQVTI LIGIHVKGAG LIYWVFPIII ASFYLLPTLI ASLFNLVLIT
IACFLTFQQF DSFTLPRIIA SFVVTNIFSL IFSVFMQNKN RQLSNKDKIN QIHNNILELI
ASSSKLSKIL PAIINGIENE IPNALCSVLL VDRKGRRLLV GAAPSLPDYY NLAIDGLSIG
HGIGAWAEAA FSSKRVVVKD IASHPGWVDW TELTQKAHLA SCWSEPIIGN NGKVLGSFVI
YFQKQYSPKN DELKLIEQFV NLTRIAIERE KADKLIWQQA NYDSLTYLPN RNLLYEHLAS
AMTQANREKK QLAVAMLDLD KFKAVNDTLG HAAGDIVLVE CSKRIKGCIR KSDIAARLGG
DEFIIVLRDA ISPEDIAALG RKLSDALAKP YFIQDESVYC TASIGIAFYP NDAADMDTLL
KNADQAMYKA KAKGRNSVHY FANQSIPSTE EIDAP
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