Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_2662 |
Symbol | |
ID | 4174422 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 3243369 |
End bp | 3245291 |
Gene Length | 1923 bp |
Protein Length | 640 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638055681 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_662229 |
Protein GI | 109898974 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.750308 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCATTAG TCAGGCAGTT GTGGTTATCC GTCATACTAA TCCTAATGGC CAGTTCACTG ACTAATTTCG TTATAAGCAC CTATTTCGAG CGAAAAAATT TGCAAGAACA ACTCTTTTTG AAAAACGTCG ATGATGTAAA TTCCTTGGCA ATGATGCTTT CTCAAGATGA GAAGCAATTG ACGGACATCG AATTATTGAT AACTGCCACG TTCGATACAG GTCACTATGA GTTTATCGAA CTGATTGATC CTGCTGGTAA AAGTGTCTTC AAACGTGAGT ATAAGGAAAA AACAAAGTCT AATGTGCCGG AGTTTGCACG CAGAATATTC GATTTTGAAG TGAAAACGGG TGTAGCGCAA GTGAGCAGTG GCTGGAAGCG CGTTGGCACT TTGTATCTTG CAAGCCATAC CCAATATGTT CACGAAGCGT TATGGCACCG AACTAAAGCA TTTTTTATCA GCTTTCTGGT TATTTCTCTA ATAGCCGGTG CGATTGGCTC GTTTGTGTTG CACGTTCTTT TAAGGCCCTT GAACATGGTA GTTGAGCAGG CTCATCGTTT TTCTGAAAAA CGTTTTATGA CATTACCTAT TCCGCGTACC ACAGAGTTTG CCAAAGTGGT TACAGCTATG AATTCATTAG CTCTGCGTTT CAAAAAAATC ATAGAAGAGG GTAACAAGCG ATTAGATGAA CTGCGATATA GGAGTCAGCA CGATGAGTTA ACAGGGTTAG CTAACTCTGA GACTTTTGAT ACATTGTTGG ATGCTCAATT AAAATACCGT GACCGAGAGG GGCATAACGT ATTGTTCATG ATAAAAATCT TTGGCATGAG CGAAATATCA CAGCGTCTTG ATAAGCACAA AGTAAACGAT ATTATTGTTA ATTTCACACA AGTGATTTTA GATTTTGCTA AACAGATTGA AGGGCGCTTT ACCGATGTAC GATTTGGCCG AGTCAGTGGT TCTGAGTTTT GCATATTACT GACTGAAGCT GAAGATATTC AGCAATTAAG TGATGTCCTA GTGGATGCGG TACGCGCGTT TAAAGGGCGC TCTCGTGATA CGTACGAGCT GTATGCTTTG CATGCAGGGG TATACCTCGC ACCCGATGAA ACACGCACTG CACTAATGCG CAGGGTACAA GCACTACTGA TTAAAGCATC AAAAGAAAGG GCGCTCGCGC TAACCGATAA TAAGCTTACT ATTGTTGCGC CATTTCAAGA TGATATTCAG TGGCGAAAAG CGCTTAGTCA TGCGCTGACA AGTGGTGTGC ATTCAATTAC TTTTCCCGTG GTTAAAAAAG ATGGTAGTGC AATTCATTAT CAAGCATTGA TGGGCTTGGA ACTGGATAAT GATGTGCGTA AGGGCGGCTA TTTTGTTCAC TGGGCGCGTA AGCTAAATAT GATCCCCCAG CTCGATTTTC GGATGATTGA GTTTATGATC TCTAAAATTG AGCAAGAAAA TAAAGCATAT GACTACGCTA TTTTGCTATC GCAAGAGACG ATGGTTTGCG AAAAATCAGT GCAGCGTTTA CGTAAACTAC TAACTGAACA CCCTAAAGTG GCACACCATC TCTGCCTTGA AGTGAGAGAG AGTGTTGCCT CCGCTCATTT TGAATTGTTC AGGCATTTCT CTGTGACACT CAAAGAAACT GGTTGTAAAG TTGGTTTAAA ACGGGTGGGT GATTCCTTTT CTACCCTCCT TGATTTACAA GAGTTAGGAT TGGATTACAT TAAAATTGAT AGTGCGTTCG TGTTTAATGT TTCGATCAAC GCCACTAATC AAAACTTCCT TCGTGGCTTA TGTTCTTTAG CGCACTCATT GGGGATCATC GTTATCGCAG ATGGGGTAAC CAGTAAAGAT GATGCTAAGT CACTTTATGA GAATGGCTTC GATGGGATTA TTTCCCTGAT GCAGCAGTTC TAA
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Protein sequence | MSLVRQLWLS VILILMASSL TNFVISTYFE RKNLQEQLFL KNVDDVNSLA MMLSQDEKQL TDIELLITAT FDTGHYEFIE LIDPAGKSVF KREYKEKTKS NVPEFARRIF DFEVKTGVAQ VSSGWKRVGT LYLASHTQYV HEALWHRTKA FFISFLVISL IAGAIGSFVL HVLLRPLNMV VEQAHRFSEK RFMTLPIPRT TEFAKVVTAM NSLALRFKKI IEEGNKRLDE LRYRSQHDEL TGLANSETFD TLLDAQLKYR DREGHNVLFM IKIFGMSEIS QRLDKHKVND IIVNFTQVIL DFAKQIEGRF TDVRFGRVSG SEFCILLTEA EDIQQLSDVL VDAVRAFKGR SRDTYELYAL HAGVYLAPDE TRTALMRRVQ ALLIKASKER ALALTDNKLT IVAPFQDDIQ WRKALSHALT SGVHSITFPV VKKDGSAIHY QALMGLELDN DVRKGGYFVH WARKLNMIPQ LDFRMIEFMI SKIEQENKAY DYAILLSQET MVCEKSVQRL RKLLTEHPKV AHHLCLEVRE SVASAHFELF RHFSVTLKET GCKVGLKRVG DSFSTLLDLQ ELGLDYIKID SAFVFNVSIN ATNQNFLRGL CSLAHSLGII VIADGVTSKD DAKSLYENGF DGIISLMQQF
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