Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_2653 |
Symbol | |
ID | 4174413 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 3218230 |
End bp | 3219186 |
Gene Length | 957 bp |
Protein Length | 318 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638055672 |
Product | transposase IS116/IS110/IS902 |
Protein accession | YP_662220 |
Protein GI | 109898965 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3547] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.356975 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATCCAA AAACAAATCA AAGCGTTAAC GTCGGTGTCG ATACGGGCAA GTTTCAATTG GATATTTATA TCCGCCCTCA CGATATTTAT TTCACTGTTT CTAACGATGA AAAGGGTATC AAAGAAGCCA TTAAAAAAAT CCAACAGCAT TCGCCTGGGC GTATCGTCAT TGAAGCAACT GGCCGATTAG AAATGCCGTT TATTATCGCG TGTGCAAATG CTAATTTACC CTTCGTTGTC GCCAATCCCA TTCACATTAA ACGCTTTGCT GGGGCGATAG GTCAGCGAGC TAAAACAGAC AAACTAGATG CTCAATTGAT TGCTCATTAT GGTGAAGCTA TTCAGCCTAA GTTATCTCAA CTAAAACCAG ATACTATGCA GGCTATGAGT GATTTAGTTG CAAGGCGAAA TCAATTGCTC GTCATGCAAA CAATGGAAAA AAACCGCCTG CAAATTCTAC CAAAAGAACT CGCCATGACC ATCAAACCTA TTCTCACTGC CTTTAAGAAT CAGATAACCA AAATCGAGAA TAAAATTGTC GCGCTCATTG AATCTTGTCC TGATTATCAA GCGAAGAATT GCATCTTACA GAGCATGAAA GGAATAGGAA AAATAGCCTC CGCTTCCATC ATCAGTAACC TGCCAGAGTT AGGTTACATG ACCAACAAAC AAGCCTCTGC GTTAGTCGGT GTGGCTCCCA TGAATCGAGA AAGTGGGCGC TATAAAGGGT TGCGGAAAAT CCAAGGTGGC AGACATCAAG TCAGAACCGT TTTGTACATG GCGATGATGT CAGCGATACA AAGTAACCCC GTATTTAAGG AAACATATCA ACGATTAGTC GCAGCAGGAA AGCCTAAGAA AGTGGCTATT ATTGCGTGCA TTAGAAAGAT GGTTGTTATC TTAAATTCAA TGCTCAGAGA CGGGGTCATG TGGGAAGCGC CGAAGACTAC AAATTAG
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Protein sequence | MNPKTNQSVN VGVDTGKFQL DIYIRPHDIY FTVSNDEKGI KEAIKKIQQH SPGRIVIEAT GRLEMPFIIA CANANLPFVV ANPIHIKRFA GAIGQRAKTD KLDAQLIAHY GEAIQPKLSQ LKPDTMQAMS DLVARRNQLL VMQTMEKNRL QILPKELAMT IKPILTAFKN QITKIENKIV ALIESCPDYQ AKNCILQSMK GIGKIASASI ISNLPELGYM TNKQASALVG VAPMNRESGR YKGLRKIQGG RHQVRTVLYM AMMSAIQSNP VFKETYQRLV AAGKPKKVAI IACIRKMVVI LNSMLRDGVM WEAPKTTN
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