Gene Patl_2650 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2650 
Symbol 
ID4174410 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand- 
Start bp3215580 
End bp3216254 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content47% 
IMG OID638055669 
ProductThiJ/PfpI 
Protein accessionYP_662217 
Protein GI109898962 
COG category[R] General function prediction only 
COG ID[COG0693] Putative intracellular protease/amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAATG TACTTATTAT TTTGACTAAC CATGCCACGC TAGGAACCAC CGATGAAGCT 
AACGGCACGT TTTCTCCTGA GCTAACCCAT GCATTACATG CCTTTCTTGA AGCCGGATAT 
CGCTATGATT TAGTGTCGAT TAAAGGCGGT GAAGCCCCTG TTTACGGTGT TGACATGGAA 
GATGACAAAA TTAACAGCGA TGTGTTCAAA AGCGAAGATT TAGCTAGCAA GTTAAGCAAT 
ACCAAAAAAG CCAGTGACGT AAACCCAGCT GATTACGACG CGGTATTCTA TCCTGGTGGC 
TTCGGTCTGC TGTCTGATTT AGCAGATGAT GAAAATGTGG CTAAGTTAAC CGCCTCTATC 
TTTGAAGCGG GTGCAGTTGT AGGCGCAGTC TGTCACGGCC CAGCAGGGTT ACTGCCGATT 
AAATTATCTA ACGGCAAATA CCTAATAGAA GACATCATGG TCACAGGCTT CACCCGTGAA 
GAAGAAGTTG AGTATGACAC CATCAATAAA ATCCCTTTCT TGCTGGAAGA GGCGCTAACA 
CGACGCGCTG GGCAGTATGC CAAAATCGCT CCATGGGGTG AATACGTGGT TAAGCAAGAC 
CGCGTGATCA CGGGGCAAAA CCCAGCATCA GCCGGTGCTG TTGGCAAAGC CATGGTAGAG 
CGTTTAGGGC AGTAA
 
Protein sequence
MKNVLIILTN HATLGTTDEA NGTFSPELTH ALHAFLEAGY RYDLVSIKGG EAPVYGVDME 
DDKINSDVFK SEDLASKLSN TKKASDVNPA DYDAVFYPGG FGLLSDLADD ENVAKLTASI 
FEAGAVVGAV CHGPAGLLPI KLSNGKYLIE DIMVTGFTRE EEVEYDTINK IPFLLEEALT 
RRAGQYAKIA PWGEYVVKQD RVITGQNPAS AGAVGKAMVE RLGQ