| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2587 |
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| Symbol | |
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| ID | 4174347 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3138869 |
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| End bp | 3140539 |
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| Gene Length | 1671 bp |
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| Protein Length | 556 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638055608 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_662156 |
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| Protein GI | 109898901 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.676646 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGAGC AAACTTACGA CTACATAATA GTGGGCGCGG GCTCTGCAGG GTGTGTATTG
GCCAATCGCT TATCTGAAGA TGCCAACAAT CAAGTGTTGT TATTGGAAAC CGGCGGCAGC
GATAAAAACA TCTTTATCAA GATGCCCACT GCGCTGTCCA TTCCGATGAA CACTGAAAAA
CTCGCTTGGC AGTTTCACAC CGAAGCTGAA CCTTATTTAG ACAATCGAAA AATGCATTGC
CCTAGGGGTA AGGTGTTAGG TGGCTCGTCG TCTATCAACG GCATGGTATA CGTACGAGGC
CATGCCAAAG ACTTTGATGA GTGGCAAGAG CACGGGGCAC AGGGATGGGA TTATCAGTCT
TGCTTACCTT ACTTTCAAAA AGCAGAAACG TTTTACTTAG GTAAAGATGC CTACCGTGGT
GATAAAGGCC CTCTTGGCGT CAATAATGGC AATGAAATGG CGAACCCCCT CTACACCGCG
TTTATCGAGG CTGGTAAGCA AGCGGGTTAC GCGGCCACCG ATGATTACAA TGCGGCACAG
CAAGAGGGTT TTGGCCCCAT GCACATGACC GTAAAAGACG GTGTGCGCAG TTCTGCAAGT
CGCGAATACC TTGACCCGGT TAAGTCTCGC AAGAACTTAA CCATAGTCAC AGGTGCACTT
GCTGAAAAAG TGCTGCTTGA CGGCAAAAAG GCCGTTGGAG TTGAGTACAG CATTAACGGC
AACAAAACGT CGGCTAAAGC ATCGAAAGAG GTGGTGTTAA GCGCAGGCTC CATTGGCTCT
CCTCACCTGT TACAACTTTC CGGGATCGGT GACAGTGACA CACTCACCGC CGCGGGGGTT
GAGGTGAAAC ATCATTTACC TGGCGTAGGG CAAAACCTGC AAGATCATTT GGAGTTTTAT
TTCCAATATA AGTGCAAGCA GCCCATCACG TTAAACGGCA AACTTGGCCT TATTTCTAAA
GGCTTGATTG GCGCTCGCTG GTTATTTACC CGCAAAGGTT TAGGCGCCAC CAATCACTTT
GAGTCGTGTG CGTTTATTCG CTCAAAACCC GGCGTAGAGT GGCCAGATAT TCAATACCAC
TTTTTGCCGG CAGCTATGCG TTATGACGGG CGAAGCGCGT TTGATGGGCA TGGTTTTCAA
GTGCATGTGG GCCATAACAA ACCGAAAAGT CGTGGAGCAG TCACGATTAA ATCTGCCGAT
CCGACTGAAG CACCAAAAAT TCAGTTCAAT TATTTGCAGC ACCAAGATGA CATTGAAGGC
TTTCGCGCCT GCGTGCGCTT AACGCGTGAA ATTATCGAGC AAAGCGCGTT TGATGATTAC
CGTGATGATG AAATTCAGCC GGGTAAGCAC ATCCAAACTG ACGAAGAAAT AGACGCGTTC
GTGCGCCAAG CAACTGAGAG TGCATACCAT CCGTCGTGTT CTTGCCGTAT GGGTGAAGAC
GCCATGGCTG TGGTGAATTC CAGCACTCAG GTGCACGGTA TTCAAGGGCT TAGAGTGGTC
GATTCGTCCA TTTTCCCCAC TGTGCCTAAC GGCAACTTGA ATGCCCCCAC CATTATGGTG
GCAGAAAAAG CCGCAGACAT GATTTTGGGC AAACCTGCAC TTAGCCAAGC GCAGGTAACG
GTTGCGACTT CAAGCAATTG GCAAACTGTG CAACGTAACG CAACGATTTA A
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| Protein sequence | MAEQTYDYII VGAGSAGCVL ANRLSEDANN QVLLLETGGS DKNIFIKMPT ALSIPMNTEK
LAWQFHTEAE PYLDNRKMHC PRGKVLGGSS SINGMVYVRG HAKDFDEWQE HGAQGWDYQS
CLPYFQKAET FYLGKDAYRG DKGPLGVNNG NEMANPLYTA FIEAGKQAGY AATDDYNAAQ
QEGFGPMHMT VKDGVRSSAS REYLDPVKSR KNLTIVTGAL AEKVLLDGKK AVGVEYSING
NKTSAKASKE VVLSAGSIGS PHLLQLSGIG DSDTLTAAGV EVKHHLPGVG QNLQDHLEFY
FQYKCKQPIT LNGKLGLISK GLIGARWLFT RKGLGATNHF ESCAFIRSKP GVEWPDIQYH
FLPAAMRYDG RSAFDGHGFQ VHVGHNKPKS RGAVTIKSAD PTEAPKIQFN YLQHQDDIEG
FRACVRLTRE IIEQSAFDDY RDDEIQPGKH IQTDEEIDAF VRQATESAYH PSCSCRMGED
AMAVVNSSTQ VHGIQGLRVV DSSIFPTVPN GNLNAPTIMV AEKAADMILG KPALSQAQVT
VATSSNWQTV QRNATI
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