| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2558 |
|---|
| Symbol | |
|---|
| ID | 4174313 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 3102168 |
|---|
| End bp | 3103448 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638055575 |
|---|
| Product | adenosylmethionine-8-amino-7-oxononanoate aminotransferase |
|---|
| Protein accession | YP_662128 |
|---|
| Protein GI | 109898873 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0161] Adenosylmethionine-8-amino-7-oxononanoate aminotransferase |
|---|
| TIGRFAM ID | [TIGR00508] adenosylmethionine-8-amino-7-oxononanoate transaminase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000437454 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAACAATT CAATACAGGC AAATCTTGCC TTTGACCAAC AACATATTTG GCACCCGTAT
ACGTCAGCTA TCGATCCATT ACCTTGCTAT CAAGTGTCCG GTGCACAAGG CGTATATATT
CATTTGGCCA CTGGCGAAAC GCTCGTTGAT GGTTGTTCAT CCTGGTGGAC GGCCATTCAT
GGCTACAATC GCCCAGAATT AAACGCTGCG GCTAAAACGC AAATTGATAA CTTCTCTCAT
GTCATGTTTG GCGGCTTAAC GCATCAACCT GCAATTGATG TGTGCAGAAA ATTAATCGAT
ATGACTCCCA CCGGCTTGGA GCGCGTTTTC CTGGCGGACT CTGGTTCGGT ATCCGTCGAA
GTTGCCATGA AAATGGCATT GCAATACTGG GCGTGTCAAG GCAGTCCAAA TAAGCACAAA
TTTATTACCC CGCGCAATGG GTATCATGGC GACACGTTCG CAGCTATGTC GGTTTGCGAT
CCCGTAAACG GCATGCACTC TTTGTTCACC GATGCTCTGG CCCAACAGAT TTTTGCCCCC
GCGCCACAAA CGCGTTTTGC CCAAACCTGG AACGAAGATG ACATCGCGCC ACTGGAAGAG
CTGATCCAGC AACACCACAA TGAGCTTGCT GCGCTGGTCA TTGAGCCTGT GGTGCAAAAT
GCGGGCGGTA TGCGTATTTA TCACCCTGAA TATCTAAAAC GTGCTCGTCA ATTATGTGAT
GACTATGGTC TGTTACTTAT TTGCGATGAA ATTGCCACTG GCTTTGGCCG CACGGGCAAA
CTATTTGCCT GTGAACATGC TGATATTAGC CCAGATATTA TGTGTGTCGG TAAAGCGCTG
ACCGGTGGCT ATGTGACGCT TGCCGCCACA ATATGCACAG AAGATGTGGC ACAAGGCATT
TGCCAAGGCA GCCCTGGGGT ATTCATGCAT GGACCCACCT ACATGGGTAA CCCTTTAGCA
TGCGCTATCG CAAATGCCAG TTTAGATATT ATTGCCACTG GTGCTTGGCA GCAGCAGGTA
CAAAACATTG AGCAACAATT AAAACAAGAG TTAACAAAAT GTGCTGAGCT TGAAGGCGTG
GCTGATGTGA GGGTACTAGG CGCAATTGGT GTCGTTCAGT GCAAATCTGC TGTTGATGTG
GCCTCGTTAC AGCGAAAATT CGTTAAAGCG GGTGTGTGGA TCCGTCCTTT CGGTAAGCTA
GTTTACATCA TGCCGCCTTA TGTTATTCAA CCAAAAGAGT TGCGCCAGTT AACACAGGCA
ATTTATGACG TGCTGAGCTA A
|
|---|
| Protein sequence | MNNSIQANLA FDQQHIWHPY TSAIDPLPCY QVSGAQGVYI HLATGETLVD GCSSWWTAIH
GYNRPELNAA AKTQIDNFSH VMFGGLTHQP AIDVCRKLID MTPTGLERVF LADSGSVSVE
VAMKMALQYW ACQGSPNKHK FITPRNGYHG DTFAAMSVCD PVNGMHSLFT DALAQQIFAP
APQTRFAQTW NEDDIAPLEE LIQQHHNELA ALVIEPVVQN AGGMRIYHPE YLKRARQLCD
DYGLLLICDE IATGFGRTGK LFACEHADIS PDIMCVGKAL TGGYVTLAAT ICTEDVAQGI
CQGSPGVFMH GPTYMGNPLA CAIANASLDI IATGAWQQQV QNIEQQLKQE LTKCAELEGV
ADVRVLGAIG VVQCKSAVDV ASLQRKFVKA GVWIRPFGKL VYIMPPYVIQ PKELRQLTQA
IYDVLS
|
|---|
| |