| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2378 |
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| Symbol | |
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| ID | 4174126 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2892853 |
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| End bp | 2893431 |
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| Gene Length | 579 bp |
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| Protein Length | 192 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638055389 |
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| Product | pseudouridine synthase, Rsu |
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| Protein accession | YP_661948 |
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| Protein GI | 109898693 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0624832 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAACATTG ATCAATATAA AAAGCCAAAA ACACCCGCCA GCCGTACAAA AATTGTACTT
TTTAATAAAC CCTTTAATGT CTTAACCCAA TTTACCGATG CCACTGGTAG ACAAACCCTG
AAGGATTTTA TCCCTATTCC TGATATTTAT GCATCCGGAC GTTTAGATAA AGACAGCGAA
GGTCTACTTG TACTCACTAA TGACGGTAAA CTACAAAGCA AACTTACCGA CCCTAAAAAG
AAAACGTCAA AAACCTATTG GGTCCAAGTG GAAGGGATCC CACAAGAACG ACAGTTACAA
GCATTGCGTG ACGGAGTAGA ACTAAAAGAT GGGTTGACTC GCCCTGCTAA GGTTGAATCA
ATGCCCGAAC CCGCCTTATG GCCCCGCACA CCGCCGGTGC GTTTTCGGCA GTCCATTCCA
ACCAGTTGGC TATCTATCAC CATTAGCGAA GGTAAAAACC GCCAAGTTAG ACGCATGACT
GCCCATATCG GCTTCCCTAC CCTTAGACTA GTTCGCTATC GAATCGGAAA TTGGACGCTA
GACGGCATCG ATACCGGTCA ATATGTGGAA CTCGATTAG
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| Protein sequence | MNIDQYKKPK TPASRTKIVL FNKPFNVLTQ FTDATGRQTL KDFIPIPDIY ASGRLDKDSE
GLLVLTNDGK LQSKLTDPKK KTSKTYWVQV EGIPQERQLQ ALRDGVELKD GLTRPAKVES
MPEPALWPRT PPVRFRQSIP TSWLSITISE GKNRQVRRMT AHIGFPTLRL VRYRIGNWTL
DGIDTGQYVE LD
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