| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2377 |
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| Symbol | |
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| ID | 4174125 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2890395 |
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| End bp | 2892626 |
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| Gene Length | 2232 bp |
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| Protein Length | 743 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638055388 |
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| Product | isocitrate dehydrogenase, NADP-dependent |
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| Protein accession | YP_661947 |
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| Protein GI | 109898692 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG2838] Monomeric isocitrate dehydrogenase |
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| TIGRFAM ID | [TIGR00178] isocitrate dehydrogenase, NADP-dependent, monomeric type |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00123907 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAACTC AGAAGTCAAA GATTATCTAT ACGAAAACTG ATGAAGCTCC CGCGCTGGCA
ACATACTCAT TGCTACCAAT AGTTGAGTCG TTCGCTTCAT CTGCTGACAT TGAAATCGAA
CTTAGCGATA TATCATTAGC AGCACGTATT TTGGCCAATT TTGCTGATTA TTTGAGTGAC
GAGCAGAAAG TACCTGATGC CCTAGCAGAG TTGGGCGAGC TCACACAAGA CGCAGCAACG
AATATCATTA AGTTACCTAA TATCAGTGCT TCTAAGCCAC AACTTAAAGC TGCTATAAAA
GAATTGAACG ATAAAGGGTT CAATGTACCG GCTTACCCCG AAGACCCAGC GACTGATGAA
GAAAAAGACA TCGAAGCGCG TTACTCTAAA GTATTAGGCA GTGCCGTAAA CCCAGTGCTT
CGTGAAGGTA ACTCTGACCG CCGTGCCCCT AAAGCAGTAA AAAGCTATGC ACGCAAAAAT
CCACATTCAA TGGGAGCGTG GAGCCAAGCG TCACAAACTC ATGTTGCCCA CATGCGCGGC
GGTGATTTTT ACTCAGGTGA AAAGTCTGTA ACGGTGAAAA ACGCCGGTCA TGTGCGCATC
GAATTCACTG ACAATAACGG TCAAGTAAAC GTATTGAAGC CACGAGTTGA TTTGCTTGCT
GGCGAAGTGA TTGATGGCAT GTTTATGAGC AAGAAAGCCC TTTGTGATTT CTTCGAAGAA
CAAATTGAAG ATGCAAAGCA AACCGGTATT CTTTTCTCAT TGCATGTTAA AGCGACCATG
ATGAAGGTGT CTCACCCGAT TGTATTTGGT CACTGTGTTA AAGTGTTCTA CAAGAAATTA
TTTGAAAAGC ACGCTGCGTT ATTTGAAGAA TTAGGTGTTG ATGCTAACAA TGGTTTGGGC
AGTGTTTATG ACAAGATAGC CACTTTACCC GAGTCTCAGC GCGCTGAAAT TCAAAAAGAT
ATTAATGCCT GCTACGCTGA CCGTCCTCCT ATTGCGATGG TTAACTCAGA TAAAGGTATT
TCTAACCTTC ACGTACCAAG TGACGTAATC GTTGATGCTT CAATGCCAGC AATGATCCGT
TCTTCTGGGC AAATGTGGGG TCCTGATGGA AAACTGCATG ATACTAAAGC GGTTATCCCA
GAAAGCACTT ACGCGACTAT CTATCAAGAG ATGATCAACT TCTGTAAAAC CCACGGTGCA
TTTGATCCCA CCACTATGGG ATCTGTCTCA AACGTTGGTT TGATGGCGCA AAAAGCGGAA
GAATACGGCT CTCACGACAA AACATTTGAA ATGACAGGTG CTGGTAAAGT ACGTGTTATT
GATCAAGACG AAAATGTGTT GATTGAGCAT GACGTAGAAG AGGGCGATAT TTGGCGTATG
TGTCAGGCGA AAGACGCGCC TATCCAAGAT TGGGTTAAAC TAGCAGTTAA CCGCGCGCGC
CAATCTGGCG ACCCGGCAAT TTTTTGGTTA GATGATGAGC GTGCTCATGA TGCTCAGCTA
ATCGAAAAAG TGAATACCTA CTTGAAAGAT CACGATACAG AAGGCTTGCA CATTGAGATA
ATGGCGCCTG TGCGTGCTAT TCGTTATTCA ATGGAACGCG CCCTTCGTGG ATTAGACACG
ATTTCTGTAA CAGGTAACGT TTTACGCGAC TACCTAACAG ATTTGTTCCC TATTCTTGAA
TTGGGTACCA GTGCAAAAAT GTTGTCTATC GTACCTTTGA TGGCCGGTGG TGGTTTGTTT
GAAACAGGCG CTGGCGGTAG TGCTCCTAAG CACGTTCAGC AGTTTGTTGA AGAAGGTCAC
CTACGTTGGG ATTCACTCGG TGAGTTTTTA GCGATTGCTG TATCAATTGA AGATTTGGCA
ATCAAAAATG ACAATGCGAA AGCGAAAGTA TTGGCTAAAG CATTAGATGC CGCGACCGAG
AAATTGCTAA ACGAAGGTAA ATCACCTCAG CGTAAAGCAG GACAACTTGA TAACCGAGGC
AGTCATTTCT ATCTTGCGAT GTATTGGGCT GAAGCGTTGT CGACGCAAGC TGAAGATGCG
TCATTAGCGG CTAAATTTGC GCCATTGTTC AAAGCGCTTA GCAGCAACGA AGCTAAAATT
GTTGCTGAGA TTGATGCAAC TCAAGGTTCG CCAGAAAACA TTGGTGGGTA TTACTACCCA
GATGATGCAT TGCTAACCCA AGCAATGTGC CCAAGTGCAA CATTGAACAC CATTCTAAAA
GATTATAAAT AA
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| Protein sequence | MTTQKSKIIY TKTDEAPALA TYSLLPIVES FASSADIEIE LSDISLAARI LANFADYLSD
EQKVPDALAE LGELTQDAAT NIIKLPNISA SKPQLKAAIK ELNDKGFNVP AYPEDPATDE
EKDIEARYSK VLGSAVNPVL REGNSDRRAP KAVKSYARKN PHSMGAWSQA SQTHVAHMRG
GDFYSGEKSV TVKNAGHVRI EFTDNNGQVN VLKPRVDLLA GEVIDGMFMS KKALCDFFEE
QIEDAKQTGI LFSLHVKATM MKVSHPIVFG HCVKVFYKKL FEKHAALFEE LGVDANNGLG
SVYDKIATLP ESQRAEIQKD INACYADRPP IAMVNSDKGI SNLHVPSDVI VDASMPAMIR
SSGQMWGPDG KLHDTKAVIP ESTYATIYQE MINFCKTHGA FDPTTMGSVS NVGLMAQKAE
EYGSHDKTFE MTGAGKVRVI DQDENVLIEH DVEEGDIWRM CQAKDAPIQD WVKLAVNRAR
QSGDPAIFWL DDERAHDAQL IEKVNTYLKD HDTEGLHIEI MAPVRAIRYS MERALRGLDT
ISVTGNVLRD YLTDLFPILE LGTSAKMLSI VPLMAGGGLF ETGAGGSAPK HVQQFVEEGH
LRWDSLGEFL AIAVSIEDLA IKNDNAKAKV LAKALDAATE KLLNEGKSPQ RKAGQLDNRG
SHFYLAMYWA EALSTQAEDA SLAAKFAPLF KALSSNEAKI VAEIDATQGS PENIGGYYYP
DDALLTQAMC PSATLNTILK DYK
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