| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2276 |
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| Symbol | |
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| ID | 4172430 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2769822 |
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| End bp | 2770832 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638055285 |
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| Product | TonB family protein |
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| Protein accession | YP_661847 |
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| Protein GI | 109898592 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
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| TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000987559 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTGCTG CTACACAACA AAACACTGAA CAACAGTGCA TGGCCAGTCA ATCACAAGGC
ATCATTGGTT TACTTTCGCC GAGTTTTCAT ACTAGCGGGC ATAAACGCCA GTGGTTGGTA
GCGATCGCTG TAGCCGCCGC ATTGCACGCC AGCGTATTTG CTGCCCTTTC AATTACCCCC
GAAGAAGTAC AGGGCAGTGC TATGGGAGAA GGACAAGACG GTATTGAAGT CGGTTTAGGG
ATGCTCGGAT CGTATCAAGA TCAACAGCTT GTTGAGTCTG AACAATTAGA AGAAACCCTT
GAGGCCCATC AAGAGCCAGA GCCAGAGTCT GAACCATTGC CTGAACCAGA GCCGGTAGTT
GAGCCAGAGC TAGTAGAAAA ACCGCAGTCC ATCATTGAGC CTAAAGTAGA GCCAGTCATT
GAGAAAACCG ACCCTGAGCC AAAATTGGAC CGCATTGACG TACCTGTAAT CGAGCAAGTT
TCGGCTGAAA ATGCGCTGCA AAAAATAGTC GAACCTAAAG ATGAGGTTCC TGAATCGCCA
GTAAACAAAA CCCAGGTAAC AAAGACCGAG ACAAACCAGC AAGACGTGAC CAAGTCGACT
ACCGAAGTAG CACAGCAAAA TGCACCAGCA CCGACTGCAC AAAAAGCCAC AAATCGTGGT
ACGGGCAGTG CTAGCTCAAC ACGCTCCGGT GGCCGAGCTG GGAATGCGAA TGACTTCTTC
GCGCAGTTGC AGGCGCATTT GCGCAAGTAT AAAACCTACC CAAGAGATTT AAAAAAGCAA
AAAATTGAAG GCGTGGTGCA GTTGCAATTC ACCATCGATC ACGATGGCTA TGTATTGGCC
TCTAGCATCA AAAAAAGCTC AGGCTCAGCT GAACTGGATA AGGCTGCGCT TGATATGTTG
CAAAAGGCCA ACCCTTTGCC ACTTGTACCC GATTCAATTA AACGAGAAAA GATCACGCTC
GTGATCCCCA TTGAATATTC ATTAATCACC AACTCAGCAT TTAAGGATTA G
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| Protein sequence | MRAATQQNTE QQCMASQSQG IIGLLSPSFH TSGHKRQWLV AIAVAAALHA SVFAALSITP
EEVQGSAMGE GQDGIEVGLG MLGSYQDQQL VESEQLEETL EAHQEPEPES EPLPEPEPVV
EPELVEKPQS IIEPKVEPVI EKTDPEPKLD RIDVPVIEQV SAENALQKIV EPKDEVPESP
VNKTQVTKTE TNQQDVTKST TEVAQQNAPA PTAQKATNRG TGSASSTRSG GRAGNANDFF
AQLQAHLRKY KTYPRDLKKQ KIEGVVQLQF TIDHDGYVLA SSIKKSSGSA ELDKAALDML
QKANPLPLVP DSIKREKITL VIPIEYSLIT NSAFKD
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