| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2134 |
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| Symbol | |
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| ID | 4173389 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2580531 |
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| End bp | 2583743 |
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| Gene Length | 3213 bp |
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| Protein Length | 1070 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638055142 |
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| Product | ribonuclease |
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| Protein accession | YP_661706 |
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| Protein GI | 109898451 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTTTCA TCCGTGGCGA TCGGTACACC ACCGAGTCAA TAAGAATGAA AAGAATGTTA
ATCAATGCAA CGCAGCAAGA AGAATTGCGT GTTGCCCTCG TCGATGGTCA AAAGCTTTAC
GATTTAGACA TTGAAAGCCC TGGTCACGAA CAGAAAAAAG CCAATATATA TAAAGGTACA
ATAACCCGCG TAGAGCCTAG TCTAGAAGCA GCTTTCGTGG ATTACGGCGC AGAGCGTCAC
GGGTTCCTAC CTCTTAAAGA AATCGCCCGC ACCTATTTTC CTCAAGGTTA TAAATTTGAA
GGCCGTCCGA ATATTAAAGA CGTCATCAAA GAAGGCCAGG AAGTTATTAT TCAAATCGAT
AAAGAAGAGC GAGGCCAGAA AGGCGCTGCG TTAACCACCT TTATCAGTTT GGCAGGTAGC
TACCTAGTAT TGATGCCTAA TAACCCAAGA GCCGGTGGTA TCTCTCGTCG CATCGAAGGT
GATGAACGTA CGGATCTTAA ACAAGCCCTA AGCAACCTTA CGTTACCTGA TGGAATGGGG
TTAATTGTTC GTACCGCTGG TGTTGGTAAA TCAGCTGAAG AATTACAATG GGATTTGAGT
GTTTTATTAA CCCATTGGAC CGCTATTTCT GAAGCGGCGG ATTCTCGCCC TGCTCCTTTC
CTAATTCACC AAGAAAGCAA TGTTATTGTA CGCGCAATTC GCGACTACCT GCGTCGTGAT
ATTGGCGAAA TACTGATTGA TAAAACCAGT ATTTACGAGC AAGCCATGAA GCACATCGAG
TTGGTTCGCC CTGATTTCGC GAATCGTGTG AAGCTATATC GTGGTGATGT GCCTTTATTC
AGCCATTATC AAATTGAAAG CCAAATTGAA TCTGCTTTTC AGCGTGAAGT GCGCTTGCCA
TCAGGTGGCT CAATCGTAAT TGACCCAACC GAAGCCCTTA CCTCAATTGA TATTAACTCT
GCCCGCGCTA CCAAAGGCAG TGATATCGAA GAGACTGCAT TTAATACCAA CCTTGAAGCC
GCTGATGAAA TTGCCCGTCA GTTACGTTTG CGTGATTTAG GTGGTTTGGT GGTCATTGAC
TTTATTGACA TGACGCCTGT ACGTCACCAA CGTGAAGTGG AAAACCGCAT GAAAGACGCG
GTAAGACACG ACCGTGCTCG AGTGCAATTG GGTCGCATTT CTCGTTTTGG TTTACTTGAA
ATGTCACGTC AACGCTTACG CCCATCACTA GGAGACTCTG CCCACAATGT GTGCCCTCGT
TGTAGTGGTC ACGGTACCGT GCGTGGGACT GAATCGTTAG CATTATCAGT ACTGCGTATC
ATGGAAGAGG AAAGCATTAA GGACAACACA GGGCAAATCG AAGCCCAGCT ACCTGTTAAT
GTGGCCACTT ACCTGTTGAA TGAAAAACGC GGCGCGGTTG CTGGCGTTGA AAAACGTCAT
AAAGTGCAAT TGGTCATTAT TCCAAATCCG AACATGGAAA CCCCTCACTA CAACGTTGCT
CGTCGTCGAC CCGATGATGC TATTCATGAC ATGAGCTATA ACGTTGAGTT AATGAAAAAC
GAAGACACCG AAGCAGATAA AGCCGTAACG GCCACACCTG TTAAAGAACA ACCTATGCTC
CAGAGCTTCG TCTCGCCTGC TAAGGCTGCA GCTGTTCAAC CTGAAACACC CAAAAAGGCT
GATGTTGAAA GCGTGTCGTT GCTCTCAAAA ATTGCTAGTT GGTTGAAGTC GTTATTCGCG
CCAGCGCCAC AACCTGAGCC AGAGCCTGAA GTTAAACCTC AGCGTAAGCC GCAACAACGT
CGCAATAGAA ACAATCCTCG CCGCAGTAAG CAAGGTGACA ATCGTTCAGA TAATCGCGAT
GACAACCGCT CTTCAAGCAA GGACGACAAT CGTTCAGACA ACCGCGATGG CAATGAAAAG
CCGAATAATC GTAAGCCTCG TCGCAATGAT AATCGTAAAC CTCGAAACGA TAACAAGTCG
CCAAAAGAGC TAACTAACAC TGAGCAGAAG AAAGATCAAA AGCCAGCAGC TCCTCAAAAA
GAAGTAAAAG AGCACAAGGT TGCTGAGCGT CGCAAACGTC GTGATAACAG ACGTAGCGTG
CGTGTAGATG ATAGTAAAGA GCAAACAGCT AAGGCTAAAA CTCACACTAG CAATGCTGAT
ATCGCTGCAA CCAACAATCA TAACGCTCAA GCTGCTGTTG AAGTAGACAG CAAAGTTGCC
GCAGTCATTG AGCAAACCGC TACACAGGAC ACTCCTGCTA CCGCGGAAAC TCAGGCTCCT
GTTGCAGTAT CTGCACAAGA TATTGAATCA CCGAAAAAGT CTAAGACGAA GGCGGAAGAG
AAGCGCGCTC AAGAGTCTTC TCACGAGACC CATGAAGACC CAGCTAAACC AGAGTCAATG
GATAACACCG GTAACGATAA AGGTGAAAAC ACGACTCAGC GTACACGCAG TCGTCGTTCA
CCTCGTCACA TTCGTGCTGC AGGTCAAAAG CGTCGTAAAG ATGAGGAAGC TCAAGCAACA
CAGGTGACCG ATAACGAGCA AAGCGCTAAG CAGGATGAGT TACAATTTGA TGCACCACAG
GCTGAAGTAG CGCCAGTGCA AACTGAACAA GCCATCAAAG AAAATGCTGT ACCTGTAACG
GATACAGTTT CTGAGGTTGC TATCAGTGCT GATGTGACTC AACAAGCACC GGCTCAAGGC
GACTTGTTAA CTCAACCAGA AGACACTATT TCCAAAGGTG AAGAAGTCGC TGAAGCGCCT
GAGGTCACGG CAGTTCAATC TATTGATGAG CAACCTGTCA TCGCAAACGA TACTAGCGTG
GAAAATAACG CACCTGTCGA CAACGCAAAG GTTGAAACTG CAGCACCTAA AGTAGACGCG
GTTGCAATCG CCCCTGAAGC AGATGAAGTC ATTGTGCAAA CGATACCGTC AGCTCCAGAA
AAGCGTGAAG AGAAATCTAA ACCTACGAAT AAGCCAAAAG CGAAAAAAGC GGTGTCAAAA
TCAATTCAGG TTAGCGCTAG CGATACTAAG GCTCGTGCTT CACACCCAAT GGCTACGCCA
GCCAGTGTTG AGCATGAGTT CAACACGTTA AACATTGGTT CGCTAAGTGA TGATGCACGA
CCGTCTGTAA ATGCTTCTGG AAGATCAGCT GCTATGGTGG CTGCATCAAC TCGTTCCGGG
GCACCGGCTA CGAGACCCGC ATCACAAGAC TAA
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| Protein sequence | MSFIRGDRYT TESIRMKRML INATQQEELR VALVDGQKLY DLDIESPGHE QKKANIYKGT
ITRVEPSLEA AFVDYGAERH GFLPLKEIAR TYFPQGYKFE GRPNIKDVIK EGQEVIIQID
KEERGQKGAA LTTFISLAGS YLVLMPNNPR AGGISRRIEG DERTDLKQAL SNLTLPDGMG
LIVRTAGVGK SAEELQWDLS VLLTHWTAIS EAADSRPAPF LIHQESNVIV RAIRDYLRRD
IGEILIDKTS IYEQAMKHIE LVRPDFANRV KLYRGDVPLF SHYQIESQIE SAFQREVRLP
SGGSIVIDPT EALTSIDINS ARATKGSDIE ETAFNTNLEA ADEIARQLRL RDLGGLVVID
FIDMTPVRHQ REVENRMKDA VRHDRARVQL GRISRFGLLE MSRQRLRPSL GDSAHNVCPR
CSGHGTVRGT ESLALSVLRI MEEESIKDNT GQIEAQLPVN VATYLLNEKR GAVAGVEKRH
KVQLVIIPNP NMETPHYNVA RRRPDDAIHD MSYNVELMKN EDTEADKAVT ATPVKEQPML
QSFVSPAKAA AVQPETPKKA DVESVSLLSK IASWLKSLFA PAPQPEPEPE VKPQRKPQQR
RNRNNPRRSK QGDNRSDNRD DNRSSSKDDN RSDNRDGNEK PNNRKPRRND NRKPRNDNKS
PKELTNTEQK KDQKPAAPQK EVKEHKVAER RKRRDNRRSV RVDDSKEQTA KAKTHTSNAD
IAATNNHNAQ AAVEVDSKVA AVIEQTATQD TPATAETQAP VAVSAQDIES PKKSKTKAEE
KRAQESSHET HEDPAKPESM DNTGNDKGEN TTQRTRSRRS PRHIRAAGQK RRKDEEAQAT
QVTDNEQSAK QDELQFDAPQ AEVAPVQTEQ AIKENAVPVT DTVSEVAISA DVTQQAPAQG
DLLTQPEDTI SKGEEVAEAP EVTAVQSIDE QPVIANDTSV ENNAPVDNAK VETAAPKVDA
VAIAPEADEV IVQTIPSAPE KREEKSKPTN KPKAKKAVSK SIQVSASDTK ARASHPMATP
ASVEHEFNTL NIGSLSDDAR PSVNASGRSA AMVAASTRSG APATRPASQD
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