| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2002 |
|---|
| Symbol | |
|---|
| ID | 4173876 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 2437488 |
|---|
| End bp | 2442326 |
|---|
| Gene Length | 4839 bp |
|---|
| Protein Length | 1612 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638055010 |
|---|
| Product | NAD-glutamate dehydrogenase |
|---|
| Protein accession | YP_661574 |
|---|
| Protein GI | 109898319 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2902] NAD-specific glutamate dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGTTG CAACACACCA GCATTCAGTT TTGTTAGAAA ACGTAGTCAA ACTCATTGAG
AAGAAAGTCG ATAAATCCCA AGTTGACCTT GTAAAAAATT TCTCGCGTAT TTTGTTCAAC
AATATTTCCC CAGAAGATCT TGATAATCGC AATGACAGCG ATCTTTACGG TGCAACATTG
AGTCTGTGGA ATAAGTTTTT AAACTTTGAT GCCAGTAAGC AAATTATTCG TGTCTTCAAC
CCTGAAGTTG GTAAGCATGG ATGGCAGTCC ACCCATACTA TCGTTGAAAT TCTGGTTCAG
GACATGCCGT TTTTAGTAGA CTCAGTGCGT ATGGCGCTTA ACAGAATGGG TGTTACCGCT
CATTTGTTGT TGCACAGCCC AATCACATTA CAACGTGATA AGGAGCATAA GTTTAGTGGT
TTCGTTGATG GCAAAAAGAC AGTAAAAGAT GCAAAAAAGG AAACAATTTT CTTAATTGAG
GTAGACCGTC AGACAACCAA GAAAGCTCTA GACGCCCTCG CTACAGAGTT AATGTCTGTG
GTGAATGAAG TCTTCTTGGC GGTGCAAGAT TGGAATGCAA TGAGTGATAA GCTCAATGCG
ATTATTGAAG CGTTTCCGAC TAGCCCGTCG CCGGCATCAG AAGAACAGAA AGAGCAAACC
ATAAAATTTC TAACATGGTT AAATGATCAT AATTTCACCA TCATGGGATA TCGCTCATAC
TGTGCGAAAG CGGTTAAAGG AGACTACCGT TGGTTAGCCG ATAACGAATC GAGTTTAGGG
TTGATGAAAA ACTCAGCCAG TGAGCGCGAG CGAGTGTTAT CTAATATTCC AGCTTCAGCT
CGAGAAGAAG CGTTAAGTAA TCACCCGTTA CTGTTGACTA AAACGAACAG TCGCTCCCGT
GTGCATCGCC CAGCGTATAT GGATTACATC GGTATAAAAC GCTTCGATGC TCAAGGAAAT
GTGGTAGGAG AAGACCGCTT CATTGGCCTT TATTCCGCTT CATTTTATAA CAGTAGCGCT
ACGCAAGTAC CTGTACTACA AAATAAAATT GATAACATCT GTCAAAAGTC CGGTTTTGAA
AAAGACTCTC ATGGTCATAA AGCATTCTTA AACATTATTG AAACCTATCC CCGAGATGAG
CTATTGCAGG GCAGCGAAGA TGAGTTAGCA CAAATAGCCT TGGGTATTTT CCAAATGCAG
GAAAGGGGGA TTTCGCGTTT GTTTGTGCGT AAAGATGTGT TCGGGCGTTT TATTTCTTGT
ATGGTTTATG TGCCAAGAGA GCGTTACAAC ACCCAATTGC GAAAAGACAC CCAAGTTTTG
CTGCAAAAGT CATTTAACAG CCAAGAAGAA GTGGAGTTTA CCACTTACTT TTCAGAATCT
GTGTATGCCA GAACGCAATA TATCGTTAGA GTGAAAGACA ACAATTCGGA ATATAATGTG
AAGGAAATTG AAAAGAACAT CATTGAGCTC ACAAAAAGTT GGAACGATAA GTTAACCGCC
ACCATTCGTT CTACCTACGG TGAAGCCGCA GGCAAAGTGC TTGAACAAAA GTACGACGAT
GCGTTTCCCC CAAGTTACAA AGAGCATAAT GTTCCTAGTG CCGCGTTAGT TGATTTAGAA
AAAATCGAGT TACTCAGTGC TGAGCACACC TTGGACATGT TGTTCTATCG TCCACAAGAA
GAGACAAACG ACAGCGAAGT CGTCAAGTTA AAGCTATTTC ACAAGAATGA ACCAATACAT
TTATCCGCTG TATTACCCAT GCTGGAAAAC TTTGGCCTGC GAGTAATTGA TGAAAGTCCT
TATCGGGTGA AATCCAGTGA CGGGGAAGTA AACTGGATCA TGGAATTTTC CATGTTGCAC
AGTACCAGTA ATCGCATGGA CTTAGAGCGT GCTCAAACAC TTTTCCAAAA TGCCTTTGCT
AAGGTTTGGT CGAATGAATT AGAAGATGAC GCGTTTAACC GTTTAGTGTT AGGGGCTGGT
TTGCCTGGTA GAAACGTGAC TATTCTGCGT GCGTATGCCA AATACATGCG TCAAATTGGC
AGTTCATTTA GTAAAGACTA TATCGCTAAC ACATTGGCCC ATTACCCAGA TATTGCCAAA
ATTTTGGTGT CTTTGTTTAA CCAACGTTAT AACCCCAAAG TGCGTCGTTC TAATAAACGC
GAAGAAACTT TATTGAACGA GGTGAAAAAG CACTTAGATA ATGTTTCGAA TCTGGATGAT
GATCGTATTA TTCGTCGTTA CTTGGATTTG ATCTTGGCCA CAACACGCAC CAACTTTTAT
CAAAGTGATG ACCAAGGCAA TGAAAAATCT TACGCCTCAT TTAAAATGTT ACCTGAGCTC
ATCCCTGATA TGCCGCTACC TCGTCCGAAA TTTGAGATAT TTGTATATTC ACCGCGTATA
GAAGGTGTAC ACCTTCGTGG CGGAAAAGTC GCGCGTGGTG GGTTGCGTTG GTCTGATAGA
CAAGAAGATT TCCGTACTGA AATATTAGGT TTAGTTAAAG CGCAGCAAGT TAAAAATACC
GTGATTGTTC CTGTGGGCGC TAAAGGGGGT TTTGTATGTA AAAATCTGCC GCTAAATCAA
GGTCGCGAAG CGTTTCAAAA AGAAGGCCAA GCCTGTTACA AAATTTTCAT CCGTAGCTTG
TTAGATATAA CCGATAACAT CGTCGATGGT AATATTGTTC ATCCTAAAGA AGTTGTGCGC
TTAGATGAAG ACGATGCCTA TTTGGTTGTT GCTGCAGATA AAGGGACCGC GACATTCTCA
GATATTGCCA ACGGGATCTC AGAAGAATTT AATTTTTGGT TGGGTGATGC GTTTGCATCC
GGTGGCAGTA TTGGCTACGA CCATAAGAAA ATGGGCATCA CCGCGCGCGG TGGATGGGAG
TCTGTTAAAC GTCATTTCCG AGAAATGGAT ATTGATTGTC AAACCACAGA TTTCACCTGT
GTCGCCGTTG GTGATATGGC GGGTGATGTA TTTGGTAATG GCATGTTGTT GTCAGAGCAC
ACTAAATTAA TATGTGCATT CAACCATTTA CACATCTTCT TTGATCCCGA CCCTGATATT
AAAACTAGTT ATGCAGAGCG TAAGCGTTTG TTCGAAAACC CATCCTTGGG ATGGGATGAT
TATGATAAGT CGCTGATCTC GACAGGTGGC GATGTATTTA GCCGCGCATC TAAATCTATC
AAGCTAACAG CTGAAATGAA AAAATGGTTA GGGACCAAAC AACAAACCAT GACCCCTAAC
GAGCTTATTC ATAATGTATT GCAGATGGAA GTCGACTTGC TGTGGAACGG CGGCATTGGT
ACATACGTAA AAAGCAGCAA AGAGAGTCAC TCACAAGTTG GCGATAGAGC CAATGATGAT
ACCCGCGTTA ACGGCGCTCA GGTGAGAGCG AAAATCATAG GGGAAGGCGG TAATCTTGGT
TTGACCCAAC TTGGGCGAAT TGAATTTGCC CGCAACGGTG GTCGCGTTAA TACTGACTTC
ATTGATAACG TAGGCGGTGT AGATTGTTCT GATAACGAAG TTAATATCAA GATCTTACTC
AATGCTCTGG TTAGTGCAGG GGACCTAACC CTGAAACAAC GCAATAACTT GTTGTTTGAA
ATGACAGACG ACGTGGGCGA ATTGGTGATC CAAGATTGCT ATCGTCAAAC TGAGTCTATT
TCCATTACTC AACTAAGCGG CGGTAGTCAG TTAAAAGAGC AACTTCGCTT TATCCATAAC
TTAGAAAAAG AAGGCAATCT AAATCGTGAG ATTGAATTCA TTCCCACTGA TGATGAAATA
TCCGATCGCT TAGCCGCATC TCAAGGTTTG ACCCGTCCTG AGCTTTCAGT ATTGATCGCC
TATGGAAAAA TGATGTTGAA AGAACGATTC AACATACCTG AGATCACTGA GAACCCTTAT
CATCAAAAAT TGTTGATAGG CGCCTTTCCT GAAGTCTTGC AAAAACGTTA TGCGGCTCAA
ATGGAACAAC ATCCATTGCG TAGAGAAATT ATCGCCACCA AGTTGACCAA TAACTTGATC
AACGACATGG GAATGAATTT CGTTTTTCGT ATGCAAGAAG AAACGGGCGC CACGATAGAT
GAAATTGCCA ATGCCTATTG TGTTGTTAAA GGCATCTTTG GTATGGAATC TTTATGGGAA
GACGTGGAAG CGTTAGATAA TAAAATTAGT GCCAATACTC AGCTGTCGAT GCTTGAAAGT
ATGCGCCGTA CTTTGCGCAG AGCATCTCGT TGGTATTTAC GCCACGGCGT GAAATCCATG
AGTATTCAAG ATGCCATCGA CAGTTACAAG TCGACGTTTG CTGACTTGTT TAAAAATCTA
AAAGACTATT TGGTTGAAGA CGAATACAGT GAACTTGAAG AAAACTGTAC ACGATTGACT
AAGGAAGGTG TACCTAAAGA TATCGCTTAC AAAGTATCAA GCTTAAGTAA TCTGTTCCCA
TGTTTAGATT TGGCACAAAT TGCTAAAGCA GAAGGTCGCA GTATTAAATT GGTGGCCAAT
TTATATTTCA AATTAGGTTC GCGTTTAGAA TTGCATTGGT TCTTGGAGCA GATAAACCAT
CAAACAGTGT CGAATCATTG GCAAGCATTG GCTAGAGCAT CTTATCGTGA AGAACTTGAC
TGGCAACAAC GTGCGTTGGC AACAGTTTTG CTAAATGGTG CACTTGAATG TGATGATGCA
GAAATTATTT TAGGTACATG GATGGAACAT AATCAGGCTC TATTAGAGCG CTGGTATAGT
ATGATGTCGG AATTCAAAAC CAGTAGTACT CATGAGTTTG CGAAATTTTC GGTCGCATTA
CGTGAATTAA TGTTGCTTAG CATTAACGCT AACGCTTAA
|
|---|
| Protein sequence | MTVATHQHSV LLENVVKLIE KKVDKSQVDL VKNFSRILFN NISPEDLDNR NDSDLYGATL
SLWNKFLNFD ASKQIIRVFN PEVGKHGWQS THTIVEILVQ DMPFLVDSVR MALNRMGVTA
HLLLHSPITL QRDKEHKFSG FVDGKKTVKD AKKETIFLIE VDRQTTKKAL DALATELMSV
VNEVFLAVQD WNAMSDKLNA IIEAFPTSPS PASEEQKEQT IKFLTWLNDH NFTIMGYRSY
CAKAVKGDYR WLADNESSLG LMKNSASERE RVLSNIPASA REEALSNHPL LLTKTNSRSR
VHRPAYMDYI GIKRFDAQGN VVGEDRFIGL YSASFYNSSA TQVPVLQNKI DNICQKSGFE
KDSHGHKAFL NIIETYPRDE LLQGSEDELA QIALGIFQMQ ERGISRLFVR KDVFGRFISC
MVYVPRERYN TQLRKDTQVL LQKSFNSQEE VEFTTYFSES VYARTQYIVR VKDNNSEYNV
KEIEKNIIEL TKSWNDKLTA TIRSTYGEAA GKVLEQKYDD AFPPSYKEHN VPSAALVDLE
KIELLSAEHT LDMLFYRPQE ETNDSEVVKL KLFHKNEPIH LSAVLPMLEN FGLRVIDESP
YRVKSSDGEV NWIMEFSMLH STSNRMDLER AQTLFQNAFA KVWSNELEDD AFNRLVLGAG
LPGRNVTILR AYAKYMRQIG SSFSKDYIAN TLAHYPDIAK ILVSLFNQRY NPKVRRSNKR
EETLLNEVKK HLDNVSNLDD DRIIRRYLDL ILATTRTNFY QSDDQGNEKS YASFKMLPEL
IPDMPLPRPK FEIFVYSPRI EGVHLRGGKV ARGGLRWSDR QEDFRTEILG LVKAQQVKNT
VIVPVGAKGG FVCKNLPLNQ GREAFQKEGQ ACYKIFIRSL LDITDNIVDG NIVHPKEVVR
LDEDDAYLVV AADKGTATFS DIANGISEEF NFWLGDAFAS GGSIGYDHKK MGITARGGWE
SVKRHFREMD IDCQTTDFTC VAVGDMAGDV FGNGMLLSEH TKLICAFNHL HIFFDPDPDI
KTSYAERKRL FENPSLGWDD YDKSLISTGG DVFSRASKSI KLTAEMKKWL GTKQQTMTPN
ELIHNVLQME VDLLWNGGIG TYVKSSKESH SQVGDRANDD TRVNGAQVRA KIIGEGGNLG
LTQLGRIEFA RNGGRVNTDF IDNVGGVDCS DNEVNIKILL NALVSAGDLT LKQRNNLLFE
MTDDVGELVI QDCYRQTESI SITQLSGGSQ LKEQLRFIHN LEKEGNLNRE IEFIPTDDEI
SDRLAASQGL TRPELSVLIA YGKMMLKERF NIPEITENPY HQKLLIGAFP EVLQKRYAAQ
MEQHPLRREI IATKLTNNLI NDMGMNFVFR MQEETGATID EIANAYCVVK GIFGMESLWE
DVEALDNKIS ANTQLSMLES MRRTLRRASR WYLRHGVKSM SIQDAIDSYK STFADLFKNL
KDYLVEDEYS ELEENCTRLT KEGVPKDIAY KVSSLSNLFP CLDLAQIAKA EGRSIKLVAN
LYFKLGSRLE LHWFLEQINH QTVSNHWQAL ARASYREELD WQQRALATVL LNGALECDDA
EIILGTWMEH NQALLERWYS MMSEFKTSST HEFAKFSVAL RELMLLSINA NA
|
|---|
| |