| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1976 |
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| Symbol | |
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| ID | 4172111 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2400552 |
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| End bp | 2401337 |
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| Gene Length | 786 bp |
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| Protein Length | 261 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638054984 |
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| Product | 3-hydroxybutyrate dehydrogenase |
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| Protein accession | YP_661548 |
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| Protein GI | 109898293 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | [TIGR01963] 3-hydroxybutyrate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAACAACT CACACGCTAT AAAACACAGA ACGATTCTGA TCACTGGCGG CGCTAGCGGG
ATTGGTTTAG GGATAGCCCA ACAATTGGGC AGCAACGGCC ATAAAATCGT TATCGCAGAC
ATGAATATGG ATGCGGCTGA AAATGCCGTC GCAGAACTAG GGGCACAGGG GATCAGCGCA
CGCGCCCTTT TACTTGACGT CACAAATCAA GAGCATATCA ATAACCTTAG CGCTAACCTT
GCTCCTGACA CGGTAGATGT TTTAATTAAC AACGCAGGTA TTCAACATGT TGCCAAACTA
GAAGAATTCC CTGGGGATAA ATGGCAGCAA TTAATCAATA TTATGCTGGT GGCGCCCGCC
ATGTTGACGC AAGCGTTACT GCCCACCATG CGCAGTAAAA ACTACGGCCG AATTATTAAT
ATTGGCTCTG TACATTCCCT TATTGCGTCC CCTTATAAAT CGGCATATGT AGCGGCAAAA
CATGGGTTGC TTGGCTTTTC GAAAACACTG GCACTGGAAA CGGGTGATTG TGATGTCACA
ATCAACACAC TTTGCCCCGC TTATGTCAAA ACACCTTTAG TGGAGAAACA AATAGCAGCC
CAAGCCAAAG AACATGGTAT GAGCGAAGAA GATGTTATCA ATAAAATCAT GCTCGAACCC
ATGCCGAAAA AGTCCTTCAT TGATATTGAT GAGCTGGCCA GCAGCGCCGC TTTTTTAATG
GACAACAGCG CGCGTAATAT TACTGGACAG ACCATCGTTA TAGACGGCGG CTGGACGGCG
CGTTAA
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| Protein sequence | MNNSHAIKHR TILITGGASG IGLGIAQQLG SNGHKIVIAD MNMDAAENAV AELGAQGISA
RALLLDVTNQ EHINNLSANL APDTVDVLIN NAGIQHVAKL EEFPGDKWQQ LINIMLVAPA
MLTQALLPTM RSKNYGRIIN IGSVHSLIAS PYKSAYVAAK HGLLGFSKTL ALETGDCDVT
INTLCPAYVK TPLVEKQIAA QAKEHGMSEE DVINKIMLEP MPKKSFIDID ELASSAAFLM
DNSARNITGQ TIVIDGGWTA R
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