Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1943 |
Symbol | |
ID | 4172078 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 2360378 |
End bp | 2361640 |
Gene Length | 1263 bp |
Protein Length | 420 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638054951 |
Product | transposase, IS4 |
Protein accession | YP_661515 |
Protein GI | 109898260 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTTTTA TCAAGAAAGA GGATTTCGCC AAAAACCAAC TAGATAACAA CACCATGCGT GATATTCATA TCTTACACGA TTTGCTTAAA AAACAATGCC CTAATCTACA TGCCAAACGT CTTTCCTCTT TGATGGTTGC CACCCAATCT TTGCTAGATG GCCAGCACCT ATCGTTGACC GAATTAGGAC GCAATATCTC AGGCTCCGTG GCCCCGAAAC ACAACATTAA ACGCATCGAC AGGCTGCTTG GTAATAACAA CCTACATAAT GAACGGCTCG ACATCTATCG TTGGCACGCT CGCTTGCTTT GCGGTGCTAA CCCCATGCCC GTTGTCCTTG TGGATTGGTC TGATGTGCGT GAGCAGCTCA GGCATTTAAC CTTACGTGCA TCGGTCAGTG TTCAGGGGCG CTCTGTCACG CTTTATGAGC GCGTATTTTC GTTCGGTGAA TACAATTCAC CTGTTAGTCA TAATCCGTTT TTACGGGAGT TGGCGAGTAT CCTGCCGTCG GGTTGTTGCC CGTTGATTGT GACCGATGCA GGCTATCGTA ACCCTTGGTT TCGTGAAGTC GAAAAGCATG GATGGTTCTG GCTAGGCCGA GTGCGCGGTG ATGTGGGATT TAAGCGTGAT GGGCAAGCAT CATGGCAAAG TAATAAGTCG TTTTATCCCA GTGCAAATTC TCGCGCCAAA TACCTTGGGT GTGGGCAATT AGGGCGTAAA AGCCCGCTTC ATGCACACCT GCATTTGTAC AAAGCAAAGG CCAAACATCG AAAGGACAAC CGTTCTTCAA AGGCAGGTCG AAACCACACC GCCCAGCAAA GCTATCGTGC GGGTAGTAAA GAGCCTTGGC TACTCGCCAC TAACCTTCCC GAGAACGATA AGCTTAACTC AAAACAGCTG GTTTCCCTTT ACGCAAGACG GATGCAAATA GAAGAAACCT TCCGTGATAT TAAAAGCCCT CAATACGGAA TGGGACTGCG CCACAGCAAC AGTCGCAGTA CCAAACGATT CGACATATTA CTGCTGATAG CGATGCTCGC AGAATGGCTA TTGCGGTTAC TCGGTATCAT TGCTCAAAAA CAAAATTGGG AAAGAGCATT TCAAGCTAAC ACCATCCGTC ATCGGCGCGT GTTATCTATC ATTAGGCTAG GCAGAGAAGT CAGGAAAAGG GCAAAAGATT ACAGGATGAA CTCAGCCCAA ATGACATGGG CTATCGCCCA ATATATTACC TGGGTTCACA AAGAAGGAAG ACCAATTCTA TGA
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Protein sequence | MSFIKKEDFA KNQLDNNTMR DIHILHDLLK KQCPNLHAKR LSSLMVATQS LLDGQHLSLT ELGRNISGSV APKHNIKRID RLLGNNNLHN ERLDIYRWHA RLLCGANPMP VVLVDWSDVR EQLRHLTLRA SVSVQGRSVT LYERVFSFGE YNSPVSHNPF LRELASILPS GCCPLIVTDA GYRNPWFREV EKHGWFWLGR VRGDVGFKRD GQASWQSNKS FYPSANSRAK YLGCGQLGRK SPLHAHLHLY KAKAKHRKDN RSSKAGRNHT AQQSYRAGSK EPWLLATNLP ENDKLNSKQL VSLYARRMQI EETFRDIKSP QYGMGLRHSN SRSTKRFDIL LLIAMLAEWL LRLLGIIAQK QNWERAFQAN TIRHRRVLSI IRLGREVRKR AKDYRMNSAQ MTWAIAQYIT WVHKEGRPIL
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