| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1941 |
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| Symbol | |
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| ID | 4172076 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2354466 |
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| End bp | 2358818 |
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| Gene Length | 4353 bp |
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| Protein Length | 1450 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638054949 |
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| Product | alpha-1,6-glucosidases, pullulanase-type |
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| Protein accession | YP_661513 |
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| Protein GI | 109898258 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02103] alpha-1,6-glucosidases, pullulanase-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTACTC GCACCAATAG TCTGCCTTTG TTGGCAATTT CAATTAGTTT ACTTAGCCTC
AATGGCTGCG GTGGTTCAGG CTCCGAGCCC GGCACCACAT TATTAACCTG TAGCATCCCT
AATGTGCCCG ATGCCGCTGG CACCAGTTGC GTGGCCCCAG AGCCGATTAG CTGTGCGCCA
CCAACCGTGC CTGACGCCTT AAACGAGTAT TGCGTGGTAG GGGCTGACCC TGCAGCACCT
GCACCTATGG CAAGCCCCGC GATGGACCAA GCCGTATTGT ATTTTAACTT AGCCGCTAAA
GGCGCTGACA ACAGCCAAAA TGATGAAACC TACACTGGCT ATCGTTTACA TACTTGGAAT
AACGATACGT GTGACGCCTA CGCCGATGCT GACACCGATT GGGCGAATGG CCGCGAACAC
ACAGGCATCG ACCCCAATTA TGGTGCGTAC TGGGTCCTTG AATTAAAACC GGATTACGCT
GGCACACTGG GTGCGTGCGG TAATTTCATT ATTCACGTAG GCACTGATGA CGCTGGCAAA
GAGCTTGGTG GCGGTGACTT TACAATGCCT TTATCACAAG ACGATCCCGA GTTTGCCAGA
ATGAACTTTA CCTTCACTGA CGTGGCTTCT ATTTTCGAAT TCCCGATTGT GTCGTTAGGG
CCTCAACCGG TGAAAATTGA TGGTGCGGCT GCCCATTGGA TAGATGGCAA CACGTTACTG
TGGGATATAG ACCCTACCGC TGTTAGCCAA GTGAAATTAC ATTATTCAGC CAATGCAGAC
TTAAGCGTTG ACGTGGACAC AGGTCTAAGC GGCACGGCAA TCGAGCTTGA AGAAATCGAG
CTCACCGACG CGCAAAAAGC CCGCGTACCT CATTTGGCCA ATATGCAGGC ATTTGCAGGC
GACTGGAGCA CGGATGAGGC AAAAGAGGTG GTTAAAACCC AAGCGTTATT GGCCTCGTAT
GATGCCGAAG GCGTGCTTAA TGGCGCGACC CAAATTCAGT TAGCTAACGC CATAGATGCG
CTGTACACCC AGGGCGAAAA TGATGCTGAT GAAGCCCGCT TGGGGGCGGT TTACAGCGAC
GGGGGGATTC AAGTTAACCT ATGGGCTCCG ACTGCTCAGT CAGTGAGTTT GAAACTGTTT
AATGATGCAA AAGCAGAAAC GGCCAGCTAC CCCATGGCGC TTGATAGCAA TAGTGGCATA
TGGCGCTATG AGGGCGGTGC AGAGCTTGAC CGTCAATTGT ATCGTTTCGA AGTAACAGCC
TATCATCCAG TGACTATGTT GCTTGAAACC ATGCTCACAA CGGACCCTTA TTCGTTGAGC
TTATCCACCA ATAGCCGCTT CTCGCAGTTT GTAAATTTAA ATGACGAAGA CCTCAAGCCT
GAGGGGTGGG AAACCCACGA GATCCCTACC ATCTCCAACC CTGAAGATGC CGTGATCTAC
GAAGGTCATA TTCGGGATTT CAGTGTGCGT GATGAAAGCA CCAGTGCACA ACATCGCGGT
AAATATTTGG CGTTCACCGA ACAGGGCAGT GTGCCCAATC AGCATTTAGC GAAATTAGTT
GAAAACGGTT TGACTCATTT TCATGTGTTG CCAGCAAACG ATATGGCGAC GGTTGAAGAA
GATGAAAGCC AAAGTGTTGA CTTGACCAGT ACTGTAGCGG ATTTATGCCG CCTAAATCGC
CAAGCGGCCG TGTGCGATGA AGAAAACGCA GACGCGACTC TGCAATCTGT GTTTGATAGT
TATGACGCTA TCGCTGAGCC ACAAAAAGCC CAAGCTCTCA CCGAGCAAAT GCGCGGCGAT
GATAGGTTTA ACTGGGGCTA CGATCCTTAT CACTTCAACG TGCCAGAAGG GAGCTATGCC
ACTGACGCGG ATGGTGTAAC ACGCATAAAA GAGATGCGTG CGATGAATCA ATCATTACAT
GAAATGGGCA TGCGAGTAGC GCTAGATGTG GTGTACAACC ATACCAATGC GTCTGGCTTA
AATGGCAAGT CGGTATTGGA TAAAGTCGTG CCGGGCTATT ATCACAGATA TGACACCATT
ACCGGTGGTA TCGTGCGCGA AACGTGCTGT GACGACACCG AGCCACGCAA TCGCATGATG
GAAAAGTTCA TGCAAGACTC GTTGGTGATG TGGGCCACGC AGTACAAGTT CGACTCATTC
CGTTTTGACA TTATGAGTCA AGCCACCAAA GACACCATGC TGCGCTTAGA ATCCGCTGTT
AAAGCGGTGG ATGAAGACAA CTATTTCTAT GGTGAAGGTT GGATAAAAGA AGACCGAGGC
TACGAGCAAG CTACGCAGAT TAATATGGCA GGCACACAAA TTGGCACCTA CAACGACCGC
ATTCGCGAAG CTGTGCGCCA AGGCCAAATA TTCAGTACCG AGCCAAGCGA TAGCGCATTA
GCCGCCCAAG ATAACGTTAA AATGAGCCTA GCAGGTACGT TAACTGACTA TATTTTGGAA
GATTACAAAG GCGCAGCGTC AGCCACCAGT AATATAGGTG GCTACGCAAC TGACCCAGCT
GACATCATCA ACTATGTGTC AAAGCATGAT AATGAAACCT TGTGGGATCA ATTGCAGTAC
ACCTTACCCA ACGATATGAC CTTGGCCGAG CGGGTACGGG CGCAGAATAT TGCGGCGACC
CTTCCTTTGA TGTCTCAAGG TATTCCGTTC TTTCAATTAG GCGGTGATTT CTTGCGCTCT
AAATCGATGG ATCGCAACAC CTATGATGCC GGCGATTGGT TTAACTATGT AGATTTCACT
ATGAACAGTA ATAACTGGCT GGTGGGGCTA CCGTTAGCTC AAGATAACGA AGGTCGCTGG
GCAGAAATGG CTAATTTCAT CTACAGCCCT GAGCGCGCCG CCAGCATGAC CGAAATTGAG
TTTGCATCTA ATGTGTTTAA TGAGTTGCTT AAAATACGTA GTTCATCAGC GTTATTCCGC
TTAACCACCG CTGACGATAT TATCGACCGT ATTGGCTTTC ATAACATCGG CGCCCGTCAA
ACCCAAGGTT TGATTGTGAT GAGCATTGAT GATGGCATAG CGGCTGACAA TGCCGAGGCA
GGTGAAAACC AAACACAACG AGCTGACATT GACCCAATGG CTGATGCGTT AGTGGTGATC
GTCAACAGTA GCAGCGAACA GCAAACCCAT GGCGTGCCAA CCGCACAGGG TTTCGAGTTA
CATTCAGTGT TAATGAACTC AGTTGATAGC CAAGTACGAG GTGCAAGCTT TGCCCAAGGT
GAAGGGGATA ACGAAGGCAA AGGCATGTTC ACGGTACCTG CATTGACCAC AGCCGTATTC
GTTAAACCAC AAATGGGCGC ACAAGGTGTG GGCTTATCGG CTTATGCGAC ATCAGGTGCA
CCAGATGTTG TCCCGTATGG CAGCACATCT GTGTTTGTGC GCGGTGCGAT GAATGGCTGG
GGTGAAGTAG ATGAAATGGT TTATCAAGGC GATGGTGTTT ACGCCGCAGT AATATCCATT
GAGCCTGGTG ATTATGAGTT CAAAGTGGCT TCAGCTGATT GGTCTACCGT GGATTTTGGT
TCCGATAACG GCGATGAATC TGTGGTGCTT GGTGCTGATA AAACCTTAAC CGCTGGCGGC
ACAAATTTAC AGTTATCCCT AAGCCAAGCT CGCGTGCTTA AATTTACCTT AGATGCCAGT
GATAAATCAG CACCGGTATT AACGGTGGAT AACGAAGAGC CGTTTTTTGG CACGACCGTG
TTTGTGCGCG GCTCACTCAA TGGCTGGGGT GAAGATGACC CGATGGACTA TGCGATTGGC
GGTCAATACA GCAGAACCAT CGAAGTAACA GCAGGTTCGT ACGAGTTTAA AGTGGCTTCT
GCAGACTGGT CAACGGTGGA CTTCGGCTCA GCAGATGCTG ATGTGAATGT GACGGTAGGC
CAAGGCAAGG CGCTCGCGCC AGGCGGCTCA AACATGACGG TGACCTTCGA CTATGATGGT
CAATACACCT TTGTATTTGA TGCCAGTGAT AAAGCCGCAC CGACGCTCAG CATATTTGAC
GCCGAGATGT TTGGTGAAAA CACGGTCTTT ATTCGCGGGG GAATGAACGG CTGGGGTGAA
GTTGATGCAC TGGTATTTAA CGCTGACGGT AGCTACACCG TTGATATTGC CATTGACGCC
GGCAGTTACG AATTCAAAAT TGCCACGGGC GATTGGTCAA CGATAGATTT GGGTGGTGTA
GGGGATGACA CCCAAGTCAT TGTTGGCCAG GCTAAGCAAT TGACTTACGC CGGTGCTAAT
TTAATGATTG ATATACCAAC AACGGCAACT TATCGTTTTA GCGTTGTCGG GCCTGACCCT
TCTGCGCCAA CAGTCACGGT GACGCAGTTG TAG
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| Protein sequence | MFTRTNSLPL LAISISLLSL NGCGGSGSEP GTTLLTCSIP NVPDAAGTSC VAPEPISCAP
PTVPDALNEY CVVGADPAAP APMASPAMDQ AVLYFNLAAK GADNSQNDET YTGYRLHTWN
NDTCDAYADA DTDWANGREH TGIDPNYGAY WVLELKPDYA GTLGACGNFI IHVGTDDAGK
ELGGGDFTMP LSQDDPEFAR MNFTFTDVAS IFEFPIVSLG PQPVKIDGAA AHWIDGNTLL
WDIDPTAVSQ VKLHYSANAD LSVDVDTGLS GTAIELEEIE LTDAQKARVP HLANMQAFAG
DWSTDEAKEV VKTQALLASY DAEGVLNGAT QIQLANAIDA LYTQGENDAD EARLGAVYSD
GGIQVNLWAP TAQSVSLKLF NDAKAETASY PMALDSNSGI WRYEGGAELD RQLYRFEVTA
YHPVTMLLET MLTTDPYSLS LSTNSRFSQF VNLNDEDLKP EGWETHEIPT ISNPEDAVIY
EGHIRDFSVR DESTSAQHRG KYLAFTEQGS VPNQHLAKLV ENGLTHFHVL PANDMATVEE
DESQSVDLTS TVADLCRLNR QAAVCDEENA DATLQSVFDS YDAIAEPQKA QALTEQMRGD
DRFNWGYDPY HFNVPEGSYA TDADGVTRIK EMRAMNQSLH EMGMRVALDV VYNHTNASGL
NGKSVLDKVV PGYYHRYDTI TGGIVRETCC DDTEPRNRMM EKFMQDSLVM WATQYKFDSF
RFDIMSQATK DTMLRLESAV KAVDEDNYFY GEGWIKEDRG YEQATQINMA GTQIGTYNDR
IREAVRQGQI FSTEPSDSAL AAQDNVKMSL AGTLTDYILE DYKGAASATS NIGGYATDPA
DIINYVSKHD NETLWDQLQY TLPNDMTLAE RVRAQNIAAT LPLMSQGIPF FQLGGDFLRS
KSMDRNTYDA GDWFNYVDFT MNSNNWLVGL PLAQDNEGRW AEMANFIYSP ERAASMTEIE
FASNVFNELL KIRSSSALFR LTTADDIIDR IGFHNIGARQ TQGLIVMSID DGIAADNAEA
GENQTQRADI DPMADALVVI VNSSSEQQTH GVPTAQGFEL HSVLMNSVDS QVRGASFAQG
EGDNEGKGMF TVPALTTAVF VKPQMGAQGV GLSAYATSGA PDVVPYGSTS VFVRGAMNGW
GEVDEMVYQG DGVYAAVISI EPGDYEFKVA SADWSTVDFG SDNGDESVVL GADKTLTAGG
TNLQLSLSQA RVLKFTLDAS DKSAPVLTVD NEEPFFGTTV FVRGSLNGWG EDDPMDYAIG
GQYSRTIEVT AGSYEFKVAS ADWSTVDFGS ADADVNVTVG QGKALAPGGS NMTVTFDYDG
QYTFVFDASD KAAPTLSIFD AEMFGENTVF IRGGMNGWGE VDALVFNADG SYTVDIAIDA
GSYEFKIATG DWSTIDLGGV GDDTQVIVGQ AKQLTYAGAN LMIDIPTTAT YRFSVVGPDP
SAPTVTVTQL
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