Gene Patl_1935 details

Gene Information

• Locus tag: Patl_1935
• ID: 4172782
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 2341839
• End bp: 2343677
• Gene Length: 1839 bp
• Protein Length: 612 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 638054943
• Product: thiamine-phosphate pyrophosphorylase
• Protein accession: YP_661507
• Protein GI: 109898252
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0351] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; [COG0352] Thiamine monophosphate synthase
• TIGRFAM ID: [TIGR00097] phosphomethylpyrimidine kinase; [TIGR00693] thiamine-phosphate pyrophosphorylase

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATAAGCC ATGATGCAAT AGTCAGCGAT CCCGAGTCGT TAAATAACGG TATAAAGCCG 
TCGGTTTTGA CCTTTTCTGG CAGCGACAGC GCAGGGCTAG CCGGCATGCA AATGGATGTA 
AAAGTCCAGC ATGCATTAGC TGTACACTGC ACCAGCGTGT TAACAGCCGT GACAGCACAA 
AATAACCAAC AGGTTTTTGC GGTTAACGCT GTCGATAGCG CTATGTTTCG CGCACAAATT 
GAGGCCGTAT CGGTATTTCG TCCTAAGGCA ATTAAAACAG GATTCGTTGC CAGCGAAGCA 
CAAGCGCAAC AAATCATTGC GGTTCGTCAG AGGCTAAAAA TCCCGTTAAT TTGTGACCCC 
GTTGGCGCCG CAACAAGTGG CGCTGAATTA CACGGTAAGC GAAACACCGA CAGCCATAGA 
AATATAAATA GGCTGCTACT TGCTCACTGT AGTTTGCTCA CCCCTAACAT TCCTGAGGCA 
CAATCGCTTG TTGGGTTTGA TATCGAAACT GCCAAGGATT TAAGAAGGGC TGCTAGAGCT 
TTGGTTGAAA TTGGGGCTCA GGCGGTGCTA ATCAAAGGCG GGCACTGGCA GTATGCTGAT 
CATATGGGTC TAGATTTTTT TTACAGCCCA GAAGAGCAGT TTTGGCTGCA AAATGAACCG 
GTAGACACAC CTCATACACG CGGCACCGGC TGCGCACTCG CCTCAGCAAT AGCCAGCGCT 
ATCGCCCTAG GTTACTGCTT AAAAGACGCT ATTGTCATAG GGAAAATGGC CATTACCCAG 
GGCCTACACA ATGCGAAAGG CCTACTCGCC AAAAGCGTGC GTTATCAAGA CGTGCGTTAT 
CAAGACACCC ATGATAAACA ACGTTATCAA GACACCCATG ATAAGCAGAT TAAGGAACTC 
GCTTCTTTCG ACACGCCTGA GTTAACAAGT GAGCAGAGTC TTCGACAGCA ACAGAGCCAG 
CTGAATTATC AAGACACCCA TGATAAGCAG ATTAAGGAAC TCGCTTCTTT CGACACGCCT 
GAGTTAACAA GTGAGCAGAG TCTCCGACAG CAACAGAGCC AGCTGAATTA TCAAGACACC 
CATAACAAAG GTGGCGTCGA AATCCTTTGT TTTCCTGCCA CTCAGCGCAG TTTACCCGGT 
CTGTATATTG AGTCCCTGAT GGCGACGAGC GAACTTAGCT CTCTCGTATT ACAGAAACAA 
GAGAACCCAT TTCCAGGTAT TGGCGACGAA TCACTGGGCT TATATCCCGT TGTTGATCGC 
GCACACTGGC TGGATACCTT GTTGCCACTT GGGGTGACTA CCATTCAACT TAGAATAAAA 
GATTTAACTG GGCAGTCACT TGAAGAGGAA ATCAAACGCG CGGTTGAAAT AGCAACGCGC 
TTCCAGTGTC GTTTGTTTAT CAATGATTAT TGGCAACTGG CTATTAAGCA CGGGGCCTAC 
GGCGTGCACT TAGGCCAAGA AGATTTAGTC GCTGCCGCTC AAAATGAGTC GAACCCAATT 
AAGCAATTGT TAGAAGCGGG AATGCGTTTA GGCATTAGTA CCCATTGTCA TTATGAAGTT 
GCACGCGCCC ATGCGCTGAA ACCTTCTTAT ATTGCATATG GTCCGGTTTT CGCCACACAA 
AGCAAAGACA TGCCGTGGGT CCCGCAAGGG TTAGCAGGGT TAGCGTACTG GCAAAAATTA 
TTAGATTACC CTGTGGTTGC CATTGGGGGG ATTGATCATG AGCGAGCAAA CGCGATCCAC 
GGGCTTGGTG TATCGGGTAT TGCTATGATT AGCTATATTA CTCAAGCCGA GAACCCTATT 
AAAGTGACAA AATCGTTATT GAGAGCGCTG GCATTATGA 

 

Protein sequence

MISHDAIVSD PESLNNGIKP SVLTFSGSDS AGLAGMQMDV KVQHALAVHC TSVLTAVTAQ 
NNQQVFAVNA VDSAMFRAQI EAVSVFRPKA IKTGFVASEA QAQQIIAVRQ RLKIPLICDP 
VGAATSGAEL HGKRNTDSHR NINRLLLAHC SLLTPNIPEA QSLVGFDIET AKDLRRAARA 
LVEIGAQAVL IKGGHWQYAD HMGLDFFYSP EEQFWLQNEP VDTPHTRGTG CALASAIASA 
IALGYCLKDA IVIGKMAITQ GLHNAKGLLA KSVRYQDVRY QDTHDKQRYQ DTHDKQIKEL 
ASFDTPELTS EQSLRQQQSQ LNYQDTHDKQ IKELASFDTP ELTSEQSLRQ QQSQLNYQDT 
HNKGGVEILC FPATQRSLPG LYIESLMATS ELSSLVLQKQ ENPFPGIGDE SLGLYPVVDR 
AHWLDTLLPL GVTTIQLRIK DLTGQSLEEE IKRAVEIATR FQCRLFINDY WQLAIKHGAY 
GVHLGQEDLV AAAQNESNPI KQLLEAGMRL GISTHCHYEV ARAHALKPSY IAYGPVFATQ 
SKDMPWVPQG LAGLAYWQKL LDYPVVAIGG IDHERANAIH GLGVSGIAMI SYITQAENPI 
KVTKSLLRAL AL