Gene Patl_1931 details

Gene Information

• Locus tag: Patl_1931
• ID: 4172778
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 2337720
• End bp: 2339606
• Gene Length: 1887 bp
• Protein Length: 628 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 638054939
• Product: thiamine biosynthesis protein ThiC
• Protein accession: YP_661503
• Protein GI: 109898248
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0422] Thiamine biosynthesis protein ThiC
• TIGRFAM ID: [TIGR00190] thiamine biosynthesis protein ThiC

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACACTG TCCTTTCTTC CAGTGAAGCG GTTGCTAACG CACCGGCTAG TGCCTCCTCT 
GAAAGTCAAA AAATTACACG CACACCCCTT CCAGCCAGTA AAAAAGTGTA TGTTGCATCG 
CCTAACGATC CTAGCGTTCG TGTGCCCATG CGCGAAATCA GTTTAACCGA CGGGACCGCC 
GTCACTTTGT ACGATACCTC AGGTCCCTAT ACCGATGAAA CCGTAGACAT AGACGTCAAC 
AAAGGCATTG CTGATGTGCG AAGTGAGTGG GTATTGTCTC GAAACGACAC TGAACAATAT 
CAAGGTCGTG AGGTACAACC CCAAGACAAC GGACACTTCG ATCAAGAACG CGCTTTTCAA 
TATTACAATG ATGCTTTGCA GCGCACGCCA AGACGTGCCT TACCTGGTAA AAATGTCAGC 
CAAATGCATT ATGCCCGCAA AGGTATTATC ACCAAAGAAA TGGAGTATAT TGCCGTTCGC 
GAAAACCAAG CTCGGGAAGC CCTAAGCAAT GAGTTCACTA CGGATGAGCG TAATAAGCGA 
CTAAAAGGTA ATTCTTTGGG AGCCAATTTG CAGCCCATTA CACCAGAGTT TGTGCGCAAA 
GAAGTGGCTG AAGGCAGAGC GATTATCCCA GCCAATATTA ACCATACAGA ACTCGAACCC 
ATGATAATCG GGCGCAACTT TCTGGTTAAA ATCAATGGCA ACATTGGTAA CTCAGCACTG 
CGTTCTTCCA TTGAAGAAGA AGTCGAAAAG CTGGTGTGGT CAATTCGTTG GGGCGGCGAC 
ACCATTATGG ACTTGTCAAC GGGCAAGAAT ATTCACTCTA CTCGCGACTA TATCGTTAGA 
AACTCTCCCG TTCCCGTGGG CACCGTGCCT ATTTATCAAG CGTTAGAAAA GGTCAAGGGT 
GTTGCTGAAG ACCTGACCTG GGAAGTGTTT CGAGATACCT TGATTGAGCA AGCCGAGCAG 
GGCGTAGATT ATTTCACAAT TCATGCTGGG GTGCGGTTGC ATCATATTCC TATGACGGTG 
GACCGCGTTA CAGGCATCGT CTCCCGTGGT GGTTCTATCA TGGCAAAATG GTGCATTGCT 
CACCATCAAG AAAATTTTTT ATACACCCAT TTTGAAGACA TTTGCCACAT CATGAAAGCA 
TATGACGTGA GCTTTTCCCT CGGTGATGGC TTGCGTCCAG GCTCATTAGC CGATGCTAAC 
GATGAAGCGC AATTTGCCGA GCTGATTACG CTTGGTGAGC TGACTAAAAT TGCCTGGAAA 
CACGATGTAC AAACTATGAT CGAAGGCCCA GGTCATGTGC CTATGCATAT GATTAAAGAA 
AATATGGATA TGCAACTCGA ACATTGTCAT GAAGCACCAT TTTATACGCT TGGCCCGCTG 
ACTACCGACA TCGCCCCTGG CTACGATCAT ATTACGAGTG GAATAGGGGC TGCGATCATT 
GGTTGGTATG GTTGTGCAAT GCTGTGCTAC GTAACCCCCA AAGAGCATTT AGGCTTGCCG 
AACAAAGATG ATGTTAAGCA AGGGATCATG GCGTATAAAA TTGCCGCTCA CGCAGCGGAT 
ATTGCTAAAG GTCACCCAGG CGCTCGCTAC CGCGACGATT TACTGTCTAA GGCGCGTTTT 
GAATTTCGTT GGGTCGATCA GTTTAATTTA GGCCTAGACC CTGATACTGC CCGCGCATTT 
CATGACGAAA CCTTGCCTAA AGATGCAGCG AAGGTCGCCC ATTTTTGCTC TATGTGTGGG 
CCTAAATTCT GCTCTATGAA AATCTCTCAA GAGGTGCGCG AATATTCAGC GGATTTGAAA 
AATACTGACA TTGAGGCCGG TATGGCGCAA AAATCCGCTG AGTTTACCGC CGCAGGTGCA 
CAGATATACG TCGCTCAGAC GGAGTAA 

 

Protein sequence

MNTVLSSSEA VANAPASASS ESQKITRTPL PASKKVYVAS PNDPSVRVPM REISLTDGTA 
VTLYDTSGPY TDETVDIDVN KGIADVRSEW VLSRNDTEQY QGREVQPQDN GHFDQERAFQ 
YYNDALQRTP RRALPGKNVS QMHYARKGII TKEMEYIAVR ENQAREALSN EFTTDERNKR 
LKGNSLGANL QPITPEFVRK EVAEGRAIIP ANINHTELEP MIIGRNFLVK INGNIGNSAL 
RSSIEEEVEK LVWSIRWGGD TIMDLSTGKN IHSTRDYIVR NSPVPVGTVP IYQALEKVKG 
VAEDLTWEVF RDTLIEQAEQ GVDYFTIHAG VRLHHIPMTV DRVTGIVSRG GSIMAKWCIA 
HHQENFLYTH FEDICHIMKA YDVSFSLGDG LRPGSLADAN DEAQFAELIT LGELTKIAWK 
HDVQTMIEGP GHVPMHMIKE NMDMQLEHCH EAPFYTLGPL TTDIAPGYDH ITSGIGAAII 
GWYGCAMLCY VTPKEHLGLP NKDDVKQGIM AYKIAAHAAD IAKGHPGARY RDDLLSKARF 
EFRWVDQFNL GLDPDTARAF HDETLPKDAA KVAHFCSMCG PKFCSMKISQ EVREYSADLK 
NTDIEAGMAQ KSAEFTAAGA QIYVAQTE