Gene Patl_1896 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1896 
Symbol 
ID4172741 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand+ 
Start bp2292849 
End bp2293598 
Gene Length750 bp 
Protein Length249 aa 
Translation table11 
GC content46% 
IMG OID638054905 
Producthypothetical protein 
Protein accessionYP_661470 
Protein GI109898215 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.00295537 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCCAG CGTTACTTGA CAAAAAACCA CGTTACCCCC GCTCATGGTC GACGCTACCC 
AATGGTGCAG AGCGCAAAGC CATTGTAGAA AGCGAACTCG ATATCATCAC TCAACAGTTT 
TTTGGTTACC ACTTGGTTAA GGTGGGTAAT TTAAGCAGTG AGTTAACTTT AAGTAAGTGC 
TCAATTAAGC ATTGTGTCAA CATGGTTGCA AAAGAGCATG AGACGGCTGG CATGCGCTCG 
TTGTCTCGCG ACATGGCGCT AAAAGAGAGC AGTGTAGACG GGTTTGTATT AGCCCATGAA 
TTGGACTTTG CCCAAGACCC TCATCAAATT TTACGGGAAG TAGACAGAGC CATTATGCCT 
GATGGCGATT TGGTGATTGT GGGCTTTAAC CCGCTCAGCT TAACTGGCTT GCGAAAGTTA 
GTCTGGTTTA ACCGCCAGAG TATTTTGCAA GAAGCGCGTT TTTTTAGCGT CCCGCGTATT 
AAAGACTGGT TGCATTTATT GGGGTTTGAA GTGACTCAAG TTACTTACCG GCCGTACTCA 
AAATTTTTTA TCACTAAACC GAATAATATC ATCACCCGTT GGTGCAAGCG TTTTTTACCT 
CAGTTGGCTA GCATGTACGT TATCGTCGCG AAAAAGCGCA CGGTGCCTTT GTCGCCTATC 
AAGCCTAAAT GGCAGCTTAA ACCAAAATTT AGTGCGGTAG GGGCGAGTAT TCGTGCGGGT 
AGTGTCAACA GTGAAAAGCC GCAAAGCTGA
 
Protein sequence
MKPALLDKKP RYPRSWSTLP NGAERKAIVE SELDIITQQF FGYHLVKVGN LSSELTLSKC 
SIKHCVNMVA KEHETAGMRS LSRDMALKES SVDGFVLAHE LDFAQDPHQI LREVDRAIMP 
DGDLVIVGFN PLSLTGLRKL VWFNRQSILQ EARFFSVPRI KDWLHLLGFE VTQVTYRPYS 
KFFITKPNNI ITRWCKRFLP QLASMYVIVA KKRTVPLSPI KPKWQLKPKF SAVGASIRAG 
SVNSEKPQS