| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1895 |
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| Symbol | |
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| ID | 4172740 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2291918 |
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| End bp | 2292691 |
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| Gene Length | 774 bp |
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| Protein Length | 257 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638054904 |
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| Product | hydroxyacylglutathione hydrolase |
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| Protein accession | YP_661469 |
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| Protein GI | 109898214 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0491] Zn-dependent hydrolases, including glyoxylases |
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| TIGRFAM ID | [TIGR03413] hydroxyacylglutathione hydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00137094 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCATCCC TGAAAATAAG ACCAATTAAA GCATTCGAGG ATAATTATAT TTGGTGCCTA
ATCAACGGTG AAACCTGCAC AGTGGTTGAC CCAGGTGACG CTAAACCCGT CATTAAATTC
TGCAGCCGCA ACAATTTAAC GTTAACAGAC ATACTGATCA CCCATCATCA TAGCGACCAC
ACAGGTGGTG TAAATGACTT GCTACAAGCC TTCGAAAACG TCAACGTTTA TGGCCCACAA
AACCCACAAA TCCAATCGAT TACTCAGCGC TTACAGGCTG GCGACACCGT TCAACTACCA
TCACTAGATG TTGAATTTAA GGTACTAGAA GTGCCCGGCC ATACGCTTGA TCATATTGCG
TATGTAGGTT CATGCGGATT ATTCTGTGGT GATACGCTCT TTTCTGCTGG TTGTGGCAGA
CTGTTCGAAG GAACGCCACA GCAGATGTAT CAATCTTTAG GGCAACTAAC GGCTTTGGCT
GACGACACGA AAGTGTACTG TACACACGAA TATACCTTAG CCAATATTAA ATTTGCTCAA
GCTGCTGAAC CAAATAATGA AGCACTATTG AACTATAAAG GTTGGGCAGA ATCTCAAAGG
GTTGATTTAA AACCTACCTT GCCCTCAACA ATAGGCCAGC AAAAAGCGAT TAATCCGTTT
TTGCGCGCGA GTAGCAAGGA AGTCATACAA CATGCTGAGC ATTACGCCGG TAGAACACTC
GCAACACCTG AATCAGTGTT TACTGCGCTT CGTGCATGGA AAGACAATTT TTAA
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| Protein sequence | MSSLKIRPIK AFEDNYIWCL INGETCTVVD PGDAKPVIKF CSRNNLTLTD ILITHHHSDH
TGGVNDLLQA FENVNVYGPQ NPQIQSITQR LQAGDTVQLP SLDVEFKVLE VPGHTLDHIA
YVGSCGLFCG DTLFSAGCGR LFEGTPQQMY QSLGQLTALA DDTKVYCTHE YTLANIKFAQ
AAEPNNEALL NYKGWAESQR VDLKPTLPST IGQQKAINPF LRASSKEVIQ HAEHYAGRTL
ATPESVFTAL RAWKDNF
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