| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1797 |
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| Symbol | sdhA |
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| ID | 4172045 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2155672 |
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| End bp | 2157441 |
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| Gene Length | 1770 bp |
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| Protein Length | 589 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638054807 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_661372 |
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| Protein GI | 109898117 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000334447 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTATTC CAGTTCACGA GTTCGATGCG GTAGTAATTG GTGCCGGTGG TGCAGGCATG
CGCGCAGCAT TGCAGATTTC TGAATCAGGA AAATCTTGCG CATTACTATC TAAAGTATTT
CCAACACGTT CACACACAGT ATCTGCCCAA GGTGGTATTA CGGTAGCACT GGGTAACTCC
CACGAAGATA ACTGGGAATG GCACATGTAC GACACCGTAA AAGGGTCAGA CTATATTGGC
GATCAAGATG CCATTGAATA CATGTGTAAA ACAGGCCCTG AAGCCATTAT CGAAATGGAA
AACATGGGTT TGCCTTTTTC TCGTTTCGAA AACGGTAAAA TTTACCAACG TCCTTTCGGC
GGTCAATCTC AGAACTTTGG TGGCGAACAG GGTGCACGCA CTGCAGCTGC AGCTGACCGA
ACCGGCCATG CGCTTTTGCA TTTGTTGTAT CAACAAAACG TAAAAAATAA AACCAAAGTG
TTCAGTGAAT GGTATGCCCT TGATTTAGTT AAAAACCAAG ATGGTGACGT TGTTGGATGT
ACCGCAATTG ATATCGAAAG CGGTGAAGTG GTTTTCTTTA AATCAAAAGC GGTTGTGTTA
GCAACAGGTG GAGCAGGGCG TATATTCGCT TCTACTACCA ACGCCCACAT TAACACGGGT
GACGGTGTTG GCATGGCCAT TCGTGCTGGT GTACCTATGC AAGACATGGA AATGTGGCAG
TTCCATCCTA CGGGTATCGC TGGTGCAGGA ACACTGGTAA CTGAAGGGTG TCGCGGTGAA
GGCGGTTACC TACTTAACAA AGATGGCGAG CGCTTCATGG AGCGTTATGC GCCAAATGCA
AAAGATTTGG CTGGTCGCGA TGTTGTTGCC CGCTCAATGA TGACTGAAAT ACGCGAAGGC
CGTGGCTGTG AAGGCCCTTG GGGTACGCAC CTTAAGTTAA AACTTGATCA CTTAGGTAAA
GACGTACTTG AGTCTCGTTT GCCTGGTATT CTTGAATTGT CACGTACGTT TGCCCACGTT
GATCCTGTAA AAGAACCTAT TCCAGTGATT CCTACCTGTC ATTACATGAT GGGGGGTATT
CCAACCAACG TGAACGGTCA AGCGTTAAGC ATTGATGCAC AAGGCAACGA AAAGCCAATT
CAAGGTTTAT TCGCTTGTGG TGAAATTGCA TGTGTATCTG TACACGGTGC AAACCGTCTT
GGCGGTAACT CGTTACTTGA TTTGGTGGTA TTTGGTCGTG CGACTGGACT ACACCTTGGT
AAAGCTATCG ACGAAATTGA AAGCCGCGAA GCGTCTTCAG ATGACATCGA CGCTGCACTC
GTGCGCTTTA ATCGCTGGGA AAACTCAGAA TCTGGTAAAG GTGAAGACCC TGTACAGATT
AAGAAAGACT TACAGAAATG CATGCAGCTT AACTTCTCGG TATTCCGTGA AGGCGATGCA
ATGGCTGAAG GTCTTAAAGA GCTCGGCGAA ATTCGTGAGC GTTTGAAATC AGCTCGTCTT
GATGACAAGA GCAGCGATTT CAACACAGCG CGTATAGAGT GTCTTGAACT AGACAACTTG
ATGGAAACCG CATACAGCAC AGCTGTAGCC GCTAATTTCC GTACAGAAAG CCGTGGCGCG
CACAGTCGTT TCGATTTCCC TGACCGTGAT GACGACAACT GGTTGTGTCA CTCTGTTTAC
TTGCCTGAAG GTGACAAAAT GTTAAAACGT GACGTAAACA TGACACCTAA ACTACGTGAA
GCTTTCCCAC CGAAAGCTAG AACTTACTAA
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| Protein sequence | MSIPVHEFDA VVIGAGGAGM RAALQISESG KSCALLSKVF PTRSHTVSAQ GGITVALGNS
HEDNWEWHMY DTVKGSDYIG DQDAIEYMCK TGPEAIIEME NMGLPFSRFE NGKIYQRPFG
GQSQNFGGEQ GARTAAAADR TGHALLHLLY QQNVKNKTKV FSEWYALDLV KNQDGDVVGC
TAIDIESGEV VFFKSKAVVL ATGGAGRIFA STTNAHINTG DGVGMAIRAG VPMQDMEMWQ
FHPTGIAGAG TLVTEGCRGE GGYLLNKDGE RFMERYAPNA KDLAGRDVVA RSMMTEIREG
RGCEGPWGTH LKLKLDHLGK DVLESRLPGI LELSRTFAHV DPVKEPIPVI PTCHYMMGGI
PTNVNGQALS IDAQGNEKPI QGLFACGEIA CVSVHGANRL GGNSLLDLVV FGRATGLHLG
KAIDEIESRE ASSDDIDAAL VRFNRWENSE SGKGEDPVQI KKDLQKCMQL NFSVFREGDA
MAEGLKELGE IRERLKSARL DDKSSDFNTA RIECLELDNL METAYSTAVA ANFRTESRGA
HSRFDFPDRD DDNWLCHSVY LPEGDKMLKR DVNMTPKLRE AFPPKARTY
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