| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1774 |
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| Symbol | |
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| ID | 4172022 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2128778 |
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| End bp | 2132272 |
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| Gene Length | 3495 bp |
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| Protein Length | 1164 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638054784 |
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| Product | chromosome segregation protein SMC |
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| Protein accession | YP_661349 |
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| Protein GI | 109898094 |
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| COG category | [D] Cell cycle control, cell division, chromosome partitioning |
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| COG ID | [COG1196] Chromosome segregation ATPases |
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| TIGRFAM ID | [TIGR02168] chromosome segregation protein SMC, common bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.21183 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTTTAA AGAAAATAAA GCTCGCGGGG TTTAAGTCTT TTGTAGATCC TACCAGCATC
CCCTTTGTTG ATGATATGAC CGCCATAGTC GGGCCGAACG GCTGCGGAAA ATCCAATGTG
ATAGATGCTG TGCGCTGGGT ATTAGGTGAA AGCTCTGCGA AAAACTTACG TGGCGATGCC
ATGATCGACG TTATTTTCAA TGGCTCCACG GCAAGAAAAC CGGTATCTCA ATGCACCGTT
GAGCTCGTAT TTGATAACAC CTCTGGGCGT ATTCAAGGGG AATTTGCCAG TTACAATGAG
ATATCCGTTA AGCGCTTAGT CACCAAAGAT GGCCAGTCGA GTTATTTTTT AAACAACAGC
AAGTGTCGTC GCAGAGATGT CACCGATTTG TTCCTCGGCA CAGGGCTTGG CCCGCGTAGT
TACGCGATCA TTGAACAGGG CACTATTTCA AGGCTGATCG AATCAAAACC CCAAGAGCTG
CGAGTCTTTA TTGAAGAAGC GGCAGGTATT TCCAAGTACA AAGAGCGTCG CAGAGAAACT
GAAAACCGCA TTCGCCACAC CAAAGAAAAC TTAGAGCGCT TAGAAGATGT CCGCGGTGAG
TTAGGTGCGC AATTACAAAA ATTGGAAAAA CAAGCATCAG CTGCAAAGAA ATATAAAGAA
CTAAAACAGC AGGAGCGACA ATATCGAAAT GAATTGGCGG CCATGCGTTG GTCTAACTTT
AACGCCAAAA TAGTTAGCCT AGAGCAACAA ACGCATCAGC AAGAGGCAGA CCTAGAAGCC
TTTATTGCCC GCCAACGAGG AGATGAAAAA GAAATAACAG TTTATCGTAC ACGCCAGCAA
GAACTCAAAC AGCAACTGCA AGATACACAA CAAGGGTATT TTCGTCTTGG CACCGACATC
ACTCGCCTAG AACAAAACCA ACTGCATAGT AAACAACGCA TTGGCCAAAT TAAGCAAGAA
TTGAGCACTC TAAATGAGGC AGTAAAAGAC AGTGAGGTTG AGCTGCAGGC TAGTGTCACT
CGGTTGGCTG AGTTAACCGA CGTGATTGAA CAACATGGGC CAGAACATGA ATTAGCACAA
CAAGCACTAG AAGATGCTAT CTGGCAATTG CAAAATACAG AAGAGCGCAC CTCAGCCGAG
CAAAATCAAT GGCGAGAGCA AGAACAAACC TTTCAAAAAT ACAAGCAACA AGCGCAACGT
TATCATAGCC AAATCCAATC AATTTTAGCT ATGCAAATGC GCAGTGAAGA GCGCATAAGT
GAAATTACCA GTGAGATCAA TAGTCTAAAA ACGGACGAGT TTGCAACGCA AATAGATGAG
GCCAAAACGG CGCAAGAACT CATCCAAGAG CAATATGATG AGGCGCAGTT ACAATACCAG
CTTCGAAACG AGGCTTTGCA TCAAGCTCAG TTAGATTGGC GAAAATTCAG CGACGCACAA
ACAAAAGTAC AAGGTGAATT GCAAACCATA GAGGCGCAAA TAAAAGCTTT GCAAGGCGTA
CAAAATTTAG CAAGAGGTCA TGAAGATTAT CAACAATATT TACTGGAAAA GGGCATTGAT
AGCCAACCAT GGCAGGCTGC GTTGACCGTA AACTCAGGAT GGGAAAAGGC TGTCGAAGCA
GTTACAGACC AGTGGAAAAA TGCACTTATT GTGAATAACA TTGACGATAT TGGCGTGTTT
GAAGAAGCGC AGTGCCAAGG CATTGCCTTA GTCGTCAATA ATAACAACGA CCAAAGCGGC
GATTTAGCGC GTAAAGAAGG GACTTTGGCA ACCGTGCTCG GTGACAGTGT CATTCCTCAG
TGGATGGCGG ATATTCGTAT CGCTCGTACC CGGCAAGAGG CTTTGGCTGC GCGTAACGCA
TTAACCCGCG GGCAAAGTAT TGTCAGCGCA GATGGATTAT GGCTTGGTAA GGATTGGGCG
CTCGATGGTT GCAGTGAAGA TGCCGGCGGC AGTATACAGC GCGCTAACGC TATCGCCGCT
CTTGAATCTG CGCTGCCGGC TATACAACAA CAGTGCGAAG AAGCACAGGG CACTAACGAG
CAAGCGCAAG AAAACGTTGA GCATTTAAGT ACACTTAAAG AGCAAGCACA GGGCAATTTA
TCTCGTTGCA GTGAAGCACT AAGCGAGCAT AAAAATCACC ACCAATGGTT GGTTCAGCAA
CAGCAAACGA ACGCTCAGCG CGTGACAAAA CTGCAAGCGG AACTTAAGCG CCAACAAGAC
ATCTTGCTTA AAGAGCAAGC CGAACTGACC GAAACTACTG CGCAGACCGA AGAGTTGGCT
GAAACACTGT TAGGGCTAGA AGAGCAGCAA AACGATATAG AGCGGCAGCG TGAAGCGTTT
AACAATCAAC TTCGAGAGCA GCGCCATCAA GTTGATAATC TAAAAAATCA ACAACATCAA
CACGCCTTAA CCTTAAAAGG TCAACAAGCG GAAGTACAAA ATGTACAGAC CATTCAAGCG
CGCGAGCGTG CTCAATTGCA AAATATGTTG TATAAAAAAG AACAGTTGAA CAACGAGTTA
TCGCTATTGT CTACTCCACT CGATGAGCAA GCTGGGGCTC TACAGGCAAT GTTAACAGAG
CATAAGCAAC TGGATGATAA GCAGCAAACG CTAAACACAG CCTTGGGTGA ACTTGAGCAC
CAACTCGCGG TAATTGAAAA AGGTCAGCAA AGCATTAATG CGCAGATTCA ACAGATGCAG
CAAGATGTAC AAACTAGCCA ATTAGCGTGT GAAGGTTACC GCGTTCGTGC CAAAAGCGTT
ATCGAACAAC TCAGCGAAGC TAAAGTGCAG TTACAGCCTT TACTTGAGGC AATAGGCGAA
AATAGCGACG AAAAGCGCTG GCAAGAATAT TTAGAGCGCA CCGTTGCTGC AGTCGCTAGG
CTTGGGGCTG TTAACTTAGC TGCCGTTGAA GAATACGATA TTCAAGCTCA GCGCAAACAA
CATTTAGATG AACAAAATCA AGATCTTGAA TCCGCTCTTG ACACGTTAGA GCAAGCAATA
CGTAAAATTG ACAAAGAAAC CAGAAGTCGC TTTAAAACGA CTTTTGATCA AGTCAATAAT
GGCTTACAAA CTCTGTTTCC TAAGGTCTTT GGGGGCGGCT CTGCCTACTT AGCCTTGACC
GATGACGATT TACTGGAAAC AGGGGTGAGT ATTATGGCGC GACCACCGGG CAAGAAAAAT
AGCACAATTC ATCTGCTTTC TGGTGGAGAA AAAGCGCTGA CCGCTTTATC ATTGGTTTTC
GCAATTTTTC AACTGAATCC AGCACCTTTT TGTTTGTTGG ATGAAGTCGA TGCACCGTTG
GATGATGCCA ATGTGGGGCG TTTTTGTAAG CTGGTAAGCG AAATGTCTAC CAGTGTGCAA
TTTATTTATA TCACCCATAA CAAAATTGCG ATGGAAATGG CTAGTCACTT AACGGGGGTC
ACCATGGCTG AGCCGGGTGT ATCACGTATG GTCGCTGTTG ATGTGGAACA AGCTTTAGCT
ATCGCGCAAG CATAA
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| Protein sequence | MRLKKIKLAG FKSFVDPTSI PFVDDMTAIV GPNGCGKSNV IDAVRWVLGE SSAKNLRGDA
MIDVIFNGST ARKPVSQCTV ELVFDNTSGR IQGEFASYNE ISVKRLVTKD GQSSYFLNNS
KCRRRDVTDL FLGTGLGPRS YAIIEQGTIS RLIESKPQEL RVFIEEAAGI SKYKERRRET
ENRIRHTKEN LERLEDVRGE LGAQLQKLEK QASAAKKYKE LKQQERQYRN ELAAMRWSNF
NAKIVSLEQQ THQQEADLEA FIARQRGDEK EITVYRTRQQ ELKQQLQDTQ QGYFRLGTDI
TRLEQNQLHS KQRIGQIKQE LSTLNEAVKD SEVELQASVT RLAELTDVIE QHGPEHELAQ
QALEDAIWQL QNTEERTSAE QNQWREQEQT FQKYKQQAQR YHSQIQSILA MQMRSEERIS
EITSEINSLK TDEFATQIDE AKTAQELIQE QYDEAQLQYQ LRNEALHQAQ LDWRKFSDAQ
TKVQGELQTI EAQIKALQGV QNLARGHEDY QQYLLEKGID SQPWQAALTV NSGWEKAVEA
VTDQWKNALI VNNIDDIGVF EEAQCQGIAL VVNNNNDQSG DLARKEGTLA TVLGDSVIPQ
WMADIRIART RQEALAARNA LTRGQSIVSA DGLWLGKDWA LDGCSEDAGG SIQRANAIAA
LESALPAIQQ QCEEAQGTNE QAQENVEHLS TLKEQAQGNL SRCSEALSEH KNHHQWLVQQ
QQTNAQRVTK LQAELKRQQD ILLKEQAELT ETTAQTEELA ETLLGLEEQQ NDIERQREAF
NNQLREQRHQ VDNLKNQQHQ HALTLKGQQA EVQNVQTIQA RERAQLQNML YKKEQLNNEL
SLLSTPLDEQ AGALQAMLTE HKQLDDKQQT LNTALGELEH QLAVIEKGQQ SINAQIQQMQ
QDVQTSQLAC EGYRVRAKSV IEQLSEAKVQ LQPLLEAIGE NSDEKRWQEY LERTVAAVAR
LGAVNLAAVE EYDIQAQRKQ HLDEQNQDLE SALDTLEQAI RKIDKETRSR FKTTFDQVNN
GLQTLFPKVF GGGSAYLALT DDDLLETGVS IMARPPGKKN STIHLLSGGE KALTALSLVF
AIFQLNPAPF CLLDEVDAPL DDANVGRFCK LVSEMSTSVQ FIYITHNKIA MEMASHLTGV
TMAEPGVSRM VAVDVEQALA IAQA
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