| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1744 |
|---|
| Symbol | |
|---|
| ID | 4173673 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 2082948 |
|---|
| End bp | 2085323 |
|---|
| Gene Length | 2376 bp |
|---|
| Protein Length | 791 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638054754 |
|---|
| Product | phosphoenolpyruvate synthase |
|---|
| Protein accession | YP_661319 |
|---|
| Protein GI | 109898064 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0574] Phosphoenolpyruvate synthase/pyruvate phosphate dikinase |
|---|
| TIGRFAM ID | [TIGR01418] phosphoenolpyruvate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGAAA ATGTGCTTTG GTATCAGCAA TTGGGAATGG ACGACGTGGG CGTCGTCGGT
GGTAAAAATG CATCCCTTGG CGAAATGATT TCGAATCTTT CAAATGCTGG TGTACAAGTA
CCCGGTGGTT TTGCTACGAC TGCGTCAGCG TTTAATCTTT TCTTAGAACA AAGTGGCCTT
GAGGCCCGCA TTCACGATTT GCTTGATACG TTGGATGTGA ATGACATTCC TGCCTTAGGC
GATGCGGGTA AAACGATCCG CCAGTGGATC ATCGACACCC CATTTTTGCC TGAACTAGAA
GCAGACATCA CATCTGCATT CAAAACCTTG CAGGGTGATG CAGGAGACGA AGCGTCATTT
GCCGTACGTT CATCTGCAAC GGCTGAAGAT ATGCCTGATG CTTCATTCGC CGGACAGCAA
GAAACATTTC TAAACGTAAA GGGCATTGAT GCCGTGATGG TTGCCATCAA GCACGTTTAT
GCCTCTTTAT TTAACGATCG TGCCATTTCT TATCGCGTAC ACCAAGGTTA TGACCACAAA
GGCGTGGCAT TATCTGCAGG TATTCAACGC ATGGTACGCA GTGACTGCGC CGCGTCAGGC
GTGATGTTCA CCATTGACAC TGAATCAGGT TTTGAAGATG TGGTATTTAT CACGTCATCA
TACGGTTTGG GTGAAATGGT GGTGCAAGGT GCCGTTAACC CAGATGAATT TTATGTACAT
AAGCCAACAT TAGACAAAGG CTTGCCAGCA GTGGTACGTC GTAATCTCGG CAGTAAATTA
ACCAAGATGA TTTACTCTGA TGATTTGAGC CATGGCAAGC AAGTGGAAAT TGTTGATATC
GATAAAGCCG ACAGTGTGGT TTTCTCGCTG ACAGATGACG AAGTTCAAGA GTTAGCCAAA
CAAGCGCAAA TCATCGAGAA ACACTACAAA CGCGCGATGG ATATCGAATG GGCTAAAGAC
GGCATCGACG GTAAACTTTA TATCGTACAA GCACGCCCAG AAACAGTTCG CAGCCGAGAA
GACATTCAAG TGATTGAGCG CTTCCGCTTA AACGGCAAAG CGAGTGTTGT ATGTGAAGGT
CGCTCTATCG GTCATAAAAT TGGTGCTGGC GTGGCAAAAG TGCTTGGCTC CATTGAAGAG
ATGGACAAAA TCCAAGCCGG TGATGTGTTG GTAACGGATA TGACCGACCC TGATTGGGAG
CCCATCATGA AAAAAGCCTC AGCGATTGTT ACCAATCGTG GCGGGCGTAC TTGTCACGCA
GCTATTATCG CTCGTGAGTT GGGTATTCCG GCTGTTGTCG GCTGTGGCAA CGCCACAGAC
CTGATTAATA ACGGTGACAA TATTACCGTT TCATGTGCCG AAGGCGACAC AGGCTTTATC
TATGGTGACG TGCTCGATTT TGACGTGGTG ACGTCTCGCA TCGATTCTAT GCCTGAAATC
CCCCTTAAAG TGATGATGAA CGTGGGTAAC CCTGACAGAG CGTTCGATTT TGCTCGCTTG
CCGAATGAAG GCGTTGGCCT TGCACGTTTA GAGTTCATCA TAAACCGTAT GATTGGCGTG
CATCCAAAAG CCTTGCTTAA CTTTGATGCC CAGCCTTCTG AACTTAAAGA AGAAATCAGC
GAAATGATCG CGGGTTACGC ATCGCCAGTT GAGTTTTATA TTGAGAAATT GGTAGAAGGG
ATCGCCACAA TCGGTGCTGC TTTCTCACCT AAAAAAGTCA TTGTGCGTAT GTCTGACTTT
AAATCCAACG AGTACTACAA CTTGGTGGGC GGGTATCAGT ACGAGCCAGA CGAAGAAAAC
CCTATGTTGG GTTTCCGTGG TGCGAGCCGT TATATTTCTG AAAGCTTCCG TGATTGCTTT
GCACTTGAAT GTGAAGCCAT TAAGCGGGTA CGTAATAAAA TGGGTTTGAC GAATGTCGAG
ATCATGATCC CATTCGTGCG TACGCTTGAA GAAGGTCGCA GCGTTATCGA ATTGCTTAAA
GAGCAAGGTT TAGTGCAAGG TGAAAATGGT TTACGCGTCA TTATGATGTG TGAATTACCG
TCAAATGCAT TATTGGCTGA TCAGTTCTTG GATATCTTCG ATGGCTTCTC GATTGGTTCA
AACGATATGA CCCAGTTAGC CCTTGGTCTT GACCGCGATT CAGGCGTGAT TGCGCACTTG
TTTGACGAGC GTGACCCTGC GGTGAAAGCG TTGCTCGCAA TGGCGATCCA AGCAGCGAAA
AAACGCGGTA AGTATGTGGG CATTTGTGGC CAAGGCCCAT CTGATCATGA AGACTTAGCC
GCATGGTTAG TTGAGCAAGG TATCGACAGC GTATCGTTAA ATCCTGATAC AGTCGTCGAG
ACTTGGTTGT ACTTAGGGGA AAAGCACAAG AAGTAA
|
|---|
| Protein sequence | MQENVLWYQQ LGMDDVGVVG GKNASLGEMI SNLSNAGVQV PGGFATTASA FNLFLEQSGL
EARIHDLLDT LDVNDIPALG DAGKTIRQWI IDTPFLPELE ADITSAFKTL QGDAGDEASF
AVRSSATAED MPDASFAGQQ ETFLNVKGID AVMVAIKHVY ASLFNDRAIS YRVHQGYDHK
GVALSAGIQR MVRSDCAASG VMFTIDTESG FEDVVFITSS YGLGEMVVQG AVNPDEFYVH
KPTLDKGLPA VVRRNLGSKL TKMIYSDDLS HGKQVEIVDI DKADSVVFSL TDDEVQELAK
QAQIIEKHYK RAMDIEWAKD GIDGKLYIVQ ARPETVRSRE DIQVIERFRL NGKASVVCEG
RSIGHKIGAG VAKVLGSIEE MDKIQAGDVL VTDMTDPDWE PIMKKASAIV TNRGGRTCHA
AIIARELGIP AVVGCGNATD LINNGDNITV SCAEGDTGFI YGDVLDFDVV TSRIDSMPEI
PLKVMMNVGN PDRAFDFARL PNEGVGLARL EFIINRMIGV HPKALLNFDA QPSELKEEIS
EMIAGYASPV EFYIEKLVEG IATIGAAFSP KKVIVRMSDF KSNEYYNLVG GYQYEPDEEN
PMLGFRGASR YISESFRDCF ALECEAIKRV RNKMGLTNVE IMIPFVRTLE EGRSVIELLK
EQGLVQGENG LRVIMMCELP SNALLADQFL DIFDGFSIGS NDMTQLALGL DRDSGVIAHL
FDERDPAVKA LLAMAIQAAK KRGKYVGICG QGPSDHEDLA AWLVEQGIDS VSLNPDTVVE
TWLYLGEKHK K
|
|---|
| |