| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1702 |
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| Symbol | |
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| ID | 4171911 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2035663 |
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| End bp | 2036775 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638054712 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_661277 |
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| Protein GI | 109898022 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTATCG TAAAGCGTTT ATTTAGCGCC TATTTAAATA CCGGCACGAA TAAGAGCAAC
ACGCCAGCGG TGCGTCAGCA AATTCAAGTC ACCAACTTAT TTGGCTTGAT TGGTTATTTC
ATCACATTGG TGCTCGGGGT AAGTGCCCTT ATCCGTAGTG CTGGGGCGAA AAATGACGAC
TTCTATCTAG GCGTGACTTT ATTGGTAGCA AGTGCTTTAT TTTTCACTTC TCGCTTAATT
CTCAAATTTT TTCAAAGTAA AAATGGCTAT AAAGTTTCGG CTAATTTGGT CACAGGCGCA
TTAATGCTTC TGATGCTCTA CCTAATAGTC ACTGGTGGGG TTAAGAATAC CGGCCCTCTG
TGGATTTACA TTGTTCCACC TGTAGTGCTC TTTTTTGGTG GCTTGAAGCG GGGCTTGATC
CAATTAGGTT GCTTCGCTTT TGTGGCTATT GTGATATTAG AGTATCCAGG TAACCTGTTC
TTAATGGCTC AATACAGTGA CGAGTTTAGC TCACGGCTTA TCTACTCGTT TATTACCGTC
AGCTTGCTAT TCGTGTTCTA TGAATATTCT CGTCAGCGTT CGTTTAAAAC ACTTCAAGAG
TTAAGCCGTG AATTTGAAAA GCAAGCGCGC TTAGACCCAC TCTCAGGATT GCAAAATCGT
CGGGGCATGC TTGAGAAGTT AGAATACGAG CACCAGCGTA CGTTAAGGCA CCATAAAAAT
TTGACGCTTA TGATGTGTGA TATCGACCAT TTCAAGCGAG TAAATGATAA ATTTGGTCAC
GATGTGGGAG ACGGTGTCAT CACACAAGTT GGTCAACTTT TTGACAAAGC ACTTCGCAAA
CAAGATACCG TTGCGCGCTG GGGCGGAGAA GAGTTTTTGT TTCTTTTGCC TGAAACCACA
CAAGAGCAAG CCTTTACGTT AGCGGAAAAG CTACGCGCTC AAGTTTCTAA GCAACAATAT
CAAGCAGGCT CAGATAGTTT CACCGTCACG GTCAGCTTAG GGATATATCA AATGCACCCT
CAAGACAATC TAGACCATGC TATCAGCCGT GCCGATACAA ATTTATATCG CGCCAAGTCC
AATGGTCGAA ACTGCTCAAT AAAATCCGAT TGA
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| Protein sequence | MFIVKRLFSA YLNTGTNKSN TPAVRQQIQV TNLFGLIGYF ITLVLGVSAL IRSAGAKNDD
FYLGVTLLVA SALFFTSRLI LKFFQSKNGY KVSANLVTGA LMLLMLYLIV TGGVKNTGPL
WIYIVPPVVL FFGGLKRGLI QLGCFAFVAI VILEYPGNLF LMAQYSDEFS SRLIYSFITV
SLLFVFYEYS RQRSFKTLQE LSREFEKQAR LDPLSGLQNR RGMLEKLEYE HQRTLRHHKN
LTLMMCDIDH FKRVNDKFGH DVGDGVITQV GQLFDKALRK QDTVARWGGE EFLFLLPETT
QEQAFTLAEK LRAQVSKQQY QAGSDSFTVT VSLGIYQMHP QDNLDHAISR ADTNLYRAKS
NGRNCSIKSD
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