| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1653 |
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| Symbol | |
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| ID | 4174082 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1970010 |
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| End bp | 1971545 |
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| Gene Length | 1536 bp |
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| Protein Length | 511 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638054663 |
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| Product | sodium/proline symporter |
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| Protein accession | YP_661229 |
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| Protein GI | 109897974 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0591] Na+/proline symporter |
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| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR02121] sodium/proline symporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAACAG CCACTTTTAT ATCATTAGGA TTGTACTTTC TCGCCATGCT CGCTATTGGC
CTTTATTCTT TCAAACAGGC AAATACTGAC GTAGAAGGTT ATATGCTGGG GGGGCGAAAC
CTTAGCCCAA AGGTTACTGC CCTTTCGGCT GGCGCTTCAG ATATGAGCGG ATGGATGTTA
ATGGGCTTAC CCGGCGCAAT GTATTTGACC GGTTTGTCTA GTGCTTGGAT AGCCATAGGA
CTCGTCATTG GCGCCTATTT TAACTATGTA CTGGTAGCTC CCCGTTTACG GGTATACACA
GAAGTGGCAA ATAATGCGAT TACTATCCCT GACTACTTTG AGAATCGGTT CAACGACAAA
AGCCGCGTTT TGCGCATTGT TTCCTCTATC GTCATTGTGC TGTTTTTTAC CTTATATACC
TCATCCGGTG TCGTTGCTGG CGGCAAATTG TTTGAAACAT CATTCGGTCT AAATTATGAG
TTGGGTTTAT ACATTACCGC TGGTGTGGTT GTGGCTTATA CCTTATTTGG AGGGTTTATG
GCTGTGAGCA TCACTGACTT TGTGCAAGGA TGTATCATGT TTGTAGCGCT GGTATTGGTT
CCAGTGGTGG TGCTCGTCGA TTTAGACGGT TGGCAAGGTG TCACCCAGTC TTTAAGTACC
CTTAATGGTC AATACTTAGA TATGTTCGTC AATGCTTCAA ATGGTGAGCT TGTATCGACA
ATTGCCATCA TATCCATGCT GTCTTGGGGA TTCGGGTATT TTGGGCAACC CCATATCATT
GTGCGCTTCA TGGCCATTCG CAGCGTAAAC GACATTAAAA CCGCTCAGAC GATCGGCATA
TCGTGGATGG TAGTAGCCAT AACAGGGGCA TTAGCAACGG GGCTACTAGG GCTAGCCTAT
GTGACCAAAC AGGGCACACC ATTGAATGAC GCGGAAACAA TATTTATTTA TTTATCTCAG
TTGCTCTTTC ATCCTTTAAT CGGTGGTTTC TTGCTTGCAG CAATTCTGGC TGCAATTATG
AGCACTATTT CCTCGCAATT ACTGGTCACA TCGAGCTCTC TAACGAGCGA CTTTTATCAA
GCATTTTTCA GACGAGATGC GAGTCAACAC GAACTGATCA TTGTTGGCCG TATATCCGTG
GTCATTGTTG CTTTGGTCGC TATTTTCTTG GCGTACGACA GAGATAGCAG CATATTGTCA
TTGGTCAGTA ATGCGTGGGC CGGTTTCGGT GCAGCATTTG GGCCTTTGAT TTTATTCAGT
CTATTTTGGA AGCGAATGAC ACTCATCTCA GCCATAAGTG GCATGTTAGT CGGCGCTGTA
ACAGTGTTAT TATGGATTTA TTTGCCAATT ACTATCAATG GCCAGAGCCT AAGTGCTTGG
CTATACGAAA TAGTACCGGG CTTTATATTG TCGAGCTTGA CTATTGTTGT AATCAGCCTA
GTGTCAAAAC AAAGTGATAG TTCAATTATC AATACATTTG AGAAAGTAGA GAAGACTCTG
CACGACTCGG TGAATAACGG CGGCAATGCT TCTTAA
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| Protein sequence | METATFISLG LYFLAMLAIG LYSFKQANTD VEGYMLGGRN LSPKVTALSA GASDMSGWML
MGLPGAMYLT GLSSAWIAIG LVIGAYFNYV LVAPRLRVYT EVANNAITIP DYFENRFNDK
SRVLRIVSSI VIVLFFTLYT SSGVVAGGKL FETSFGLNYE LGLYITAGVV VAYTLFGGFM
AVSITDFVQG CIMFVALVLV PVVVLVDLDG WQGVTQSLST LNGQYLDMFV NASNGELVST
IAIISMLSWG FGYFGQPHII VRFMAIRSVN DIKTAQTIGI SWMVVAITGA LATGLLGLAY
VTKQGTPLND AETIFIYLSQ LLFHPLIGGF LLAAILAAIM STISSQLLVT SSSLTSDFYQ
AFFRRDASQH ELIIVGRISV VIVALVAIFL AYDRDSSILS LVSNAWAGFG AAFGPLILFS
LFWKRMTLIS AISGMLVGAV TVLLWIYLPI TINGQSLSAW LYEIVPGFIL SSLTIVVISL
VSKQSDSSII NTFEKVEKTL HDSVNNGGNA S
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