| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1632 |
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| Symbol | |
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| ID | 4174061 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1941283 |
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| End bp | 1943394 |
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| Gene Length | 2112 bp |
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| Protein Length | 703 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638054642 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_661208 |
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| Protein GI | 109897953 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.141024 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTCCTA TTACTAAATC ATTTCAGTAT GGTCAGCATA CTGTCACGCT AGAAACGGGC
GTAATCGCTC GTCAAGCAAC CGCTGCTGTT ATGGCAAGCA TGGACGACAC ATCAGTGTTG
GTTTCTGTTG TTGGTAAAAA AGACACCAAG CCAGGCCAAG ACTTCTTCCC GTTAACGGTT
AACTACCAAG AAAGAACGTA CGCTGCGGGT AAAATCCCAG GTGGTTTCTT TAAGCGTGAA
GGTCGCCCTT CTGAATACGA AACACTCACG TCTCGTTTGA TTGACCGTCC AATTCGTCCA
TTATTCCCTG ACGGGTTCAT GAACGAAGTA CAAATCATAG TGACGGTTGT TTCAGCTAAC
CCTGAAATTC CAACTGACAT CATCTCGCTA ATCGGTACGT CTGCCGCGCT TGCTATCTCA
GGTATGCCTT TCAATGGTCC TGTTGGTGCT GCGCGTGTTG GTTACACTGA TGGCCAATAT
GTACTTAATA CACGTACTTC TGAGCTTGAA ATTAGCCAAC TAGACTTAGT GGTTGCCGGT
ACCAAAGGCG CAGTATTGAT GGTTGAGTCA GAAGCTGAAG TATTGTCTGA AGACGTGATG
CTAGGTGCCG TTATGTTCGG TCACGAGCAA ATGCAAACTG TTGTTAATGC TGTGACTGAA
TTTGCTGCTG AAGTTAACAC GCCTAAGTGG GATTGGGTTG CTGAGCCTGC TAACGTCACA
CTTAAAGACA AAATTAAAGC ACTCGCTGAA GCTGAAATGA CAGAGGCGTA TCAAATCTCT
GACAAGATGG CGCGTAAAGA CGCTATCGTT GCTCTAACGG ACAAAACCGT TGCTGCGATT
GTTGAAGCAG ATGCAGAGCA AGACGCTAAA GAAGTATCTG AGCTTTTACA TGAGCTTGAA
AGTGACGTAG TACGTTCACG TATTCTTGCT GGTCAACCAC GTATCGATGG TCGCGACCCT
GCGATGATCC GTGCACTTGA CGTAGCAACG GGTATTTTGC CACGTACTCA CGGTTCTGCT
TTGTTCACTC GTGGTGAAAC ACAAGCCATC GTTGCCGCTA CCCTAGGGAC TGAGCGTGAC
GCACAGATGA TTGACGGTCT AAACGGTAAA GTGGATAGCC GCTTCATGTT GCATTACAAC
TTCCCTCCTT ACTGTGTAGG CGAGACAGGT TTTGTTGGTT CACCTAAGCG TCGCGAAATA
GGCCACGGTC GTCTAGCAAA ACGTGGTATT CAAGCGGTTA TGCCGTCTGA AAAAGAATTC
CCGTACGTAG TACGTGTGGT GTCTGAAATC ACTGAATCAA ACGGTTCGTC TTCTATGGCA
TCAGTTTGTG GTACTTCTTT GGCATTGATG GACGCGGGTG TTCCAATTAA AGCATCAGTA
GCTGGTATTG CTATGGGTCT TGTGAAAAAC GATGAAAACT TCGTTGTTCT TTCAGACATC
TTGGGTGACG AAGATCACCT TGGTGACATG GACTTTAAAG TAGCCGGTAC CACTGAAGGC
ATCACTGCGC TTCAAATGGA TATCAAAATC GAAGGTATCA CTCAAGAAAT CATGCAAGTT
GCTTTGAAAC AAGCAAAAGA AGCGCGTTTG CATATTCTAG GTGTGATGGA CCAAGCGATT
TCTGGTCACC GTGATGAAAT GTCTGAATTC GCTCCGCGTA TTTACACATT GAAAATCGAC
CAAGATAAAA TCCGTGACGT TATCGGTAAA GGCGGCGCAA TGATCCGTTC TATTACTGAA
GCATCTGACA CTAACATCGA AATCGAAGAT GATGGCACAA TCAAAATCTT CGCTACCGAG
CGTGCTAAAG CTGATATCGC TATCAGCAAA ATTGAGCAAG TAACGGCTGA TGTTGAAGCA
GGCAAAACCT ACGAAGGTAA AGTGACGCGT ATCGTTGATT TCGGTGCGTT CGTTGAAATC
TTGCCGGGTA AGGAAGGTCT AGTACACATT TCACAAATCG CTCATGAGCG TGTGAATAAA
GTGGCTGATC ATCTTAGCGA AGGTCAAATC ATCAACGTTA AAGTGATGGA AATTGACCGT
CAAAACCGTG TTCGTTTGAG TATTAAAGAA TTGCTAGAAA AGCCAGCAGC ACCTGCTGAA
GGCAACGAGT AA
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| Protein sequence | MTPITKSFQY GQHTVTLETG VIARQATAAV MASMDDTSVL VSVVGKKDTK PGQDFFPLTV
NYQERTYAAG KIPGGFFKRE GRPSEYETLT SRLIDRPIRP LFPDGFMNEV QIIVTVVSAN
PEIPTDIISL IGTSAALAIS GMPFNGPVGA ARVGYTDGQY VLNTRTSELE ISQLDLVVAG
TKGAVLMVES EAEVLSEDVM LGAVMFGHEQ MQTVVNAVTE FAAEVNTPKW DWVAEPANVT
LKDKIKALAE AEMTEAYQIS DKMARKDAIV ALTDKTVAAI VEADAEQDAK EVSELLHELE
SDVVRSRILA GQPRIDGRDP AMIRALDVAT GILPRTHGSA LFTRGETQAI VAATLGTERD
AQMIDGLNGK VDSRFMLHYN FPPYCVGETG FVGSPKRREI GHGRLAKRGI QAVMPSEKEF
PYVVRVVSEI TESNGSSSMA SVCGTSLALM DAGVPIKASV AGIAMGLVKN DENFVVLSDI
LGDEDHLGDM DFKVAGTTEG ITALQMDIKI EGITQEIMQV ALKQAKEARL HILGVMDQAI
SGHRDEMSEF APRIYTLKID QDKIRDVIGK GGAMIRSITE ASDTNIEIED DGTIKIFATE
RAKADIAISK IEQVTADVEA GKTYEGKVTR IVDFGAFVEI LPGKEGLVHI SQIAHERVNK
VADHLSEGQI INVKVMEIDR QNRVRLSIKE LLEKPAAPAE GNE
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