| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1587 |
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| Symbol | |
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| ID | 4173841 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1892943 |
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| End bp | 1894034 |
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| Gene Length | 1092 bp |
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| Protein Length | 363 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638054597 |
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| Product | phospho-2-dehydro-3-deoxyheptonate aldolase |
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| Protein accession | YP_661163 |
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| Protein GI | 109897908 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0722] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase |
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| TIGRFAM ID | [TIGR00034] phospho-2-dehydro-3-deoxyheptonate aldolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTACGCG ACAACATTAA TAATATTAAC GTTACCTCTG AACAGGTACT TGTTACCCCT
GAAACCTTAA AGAGTGAGCT TCCTGTTACG GACCACGCTT TATCCGTGAT CCAATCTTCA
CGTCAAATTA TTTCTGACAT TATTCATCGT CGAGATCATC GTTTTTTGGT TATCAGTGGA
CCATGCTCAA TTCATGACAT TGAAGCGGCA AAAGAGTACG CACTTAAACT TAAAGAGTTA
CATGAATCAT GCAAAGACAC GCTATACATA GTGATGCGAG TGTATTTTGA GAAACCACGT
ACGACGGTCG GTTGGAAAGG GCTGATCAAC GATCCACATA TTGATGATAC GTTTGATATT
GAAACAGGTT TACGTAAAGC GCGGGAGTTA CTCATTTGGT TGGCTGAGCT TGAAATTCCA
GTTGCTACAG AAGCGCTTGA CCCGATTAGC CCTCAGTATC TAGCTGAACT ATTCAGCTGG
TCGGCAATTG GCGCGCGTAC TTCTGAGTCA CAAACTCACC GAGAAATGGC GAGCGGCCTA
TCAATGCCTG TGGGCTTTAA AAACGGTACT GATGGTAGCC TAGGTATTGC TATTAATGCA
CTGCAGTCAG CGGCCTCAGG TCACAGTTTC ATGGGGATAA ATGGCGAAGG GCAGGTGAGT
GTGATCCAAA CGCAAGGTAA CCCAGATGGC CACATTATTC TTCGTGGTGG TAAGCAACCA
AACTATGATT CTGTTTGCGT GGCAGATTGT GAAGAAGAAA TGCGCGCTGC AAAATTAAGT
GCTGGTTTAG TCGTGGATTG CAGCCATGCG AATTCTAGTA AAGACTACCG CCGCCAGCCA
TTGGTAGCAC AAAATGTGGT GAATCAAATA CTCGGTGGTA ACCAATCGGT GATTGGCATT
ATGTTAGAAA GCCATCTGAA TGCGGGCAAT CAAAGCAATA AGGGTAAGAC CCCTAGTGAG
CTAGAGTATG GTGTGTCTAT CACAGATGGT TGTATCAATT GGGAATCAAC AGATGAGTTA
ATTAATCACA TGCGTGATAA ACTTATTACT GTATTGCCTT TGCGGTTAAA TAAACTTAAC
AGCCCAAATT AA
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| Protein sequence | MLRDNINNIN VTSEQVLVTP ETLKSELPVT DHALSVIQSS RQIISDIIHR RDHRFLVISG
PCSIHDIEAA KEYALKLKEL HESCKDTLYI VMRVYFEKPR TTVGWKGLIN DPHIDDTFDI
ETGLRKAREL LIWLAELEIP VATEALDPIS PQYLAELFSW SAIGARTSES QTHREMASGL
SMPVGFKNGT DGSLGIAINA LQSAASGHSF MGINGEGQVS VIQTQGNPDG HIILRGGKQP
NYDSVCVADC EEEMRAAKLS AGLVVDCSHA NSSKDYRRQP LVAQNVVNQI LGGNQSVIGI
MLESHLNAGN QSNKGKTPSE LEYGVSITDG CINWESTDEL INHMRDKLIT VLPLRLNKLN
SPN
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