| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1491 |
|---|
| Symbol | |
|---|
| ID | 4172217 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 1791360 |
|---|
| End bp | 1792094 |
|---|
| Gene Length | 735 bp |
|---|
| Protein Length | 244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638054501 |
|---|
| Product | pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
|---|
| Protein accession | YP_661068 |
|---|
| Protein GI | 109897813 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0748] Putative heme iron utilization protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTAG ACAAATATAT CTTCGACGCC AAAATCCTCG TTCGTCAGCA GCACAGCGGG
GTACTTAGCA CACACTCACA ATCAGTGCAG GGTTATCCCT TTGGCTCTGT GGTGCCGTAT
TTTATGACTA ATGAAGGTAA CTTAGTCACT TATATTAGCC AAATTGCCCA GCACACGCGC
AATATCAAAG GTAACCCTAA AGTGTCGGTG ACTATATTTG ACACCTTGCA AGATGATTCT
CAAGCCAATG GCCGAGTGAC CTTTTTGGGA GATGCAGAAT TGGTGGAAGA TGCCTATTTA
ACTGAGCAGT ATCTGGCGTT GTTCCCTCGC GCTAAGGGCT ATAAGCAGAC CCACGACTTT
TCGTTTTATC AAATCAAACC TGAGCGCATT CGTTACATAG GCGGTTTCGG CAAAATCTTT
TGGATAAACA AAGAAGATTG GCAATCAAGC GAAAAGTCTG AGGATTGGCC GCGAGTGAGT
AAAGGGATTA TTGAACACAT GAATGAGGAT CACCACGACG CCATGACGCT CATTGTTGAA
CATCAATTCG CACTGCGAGC AAAACAGGTG ACAATGCTAT CGGCATTTTA TGAAGGCTGT
CACATCGAAG CTGACGGGAA AGTACTGTTC TTGAAATTTG ATAAACCATG CACTAGCGCG
CAAGCAGTGC GGGAGCAGTT AGTGGCAGCG ACACATGCAG CAAGAGCAGA CTTAACGTTA
GCTGTGGCTA ATTAA
|
|---|
| Protein sequence | MKLDKYIFDA KILVRQQHSG VLSTHSQSVQ GYPFGSVVPY FMTNEGNLVT YISQIAQHTR
NIKGNPKVSV TIFDTLQDDS QANGRVTFLG DAELVEDAYL TEQYLALFPR AKGYKQTHDF
SFYQIKPERI RYIGGFGKIF WINKEDWQSS EKSEDWPRVS KGIIEHMNED HHDAMTLIVE
HQFALRAKQV TMLSAFYEGC HIEADGKVLF LKFDKPCTSA QAVREQLVAA THAARADLTL
AVAN
|
|---|
| |