| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1479 |
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| Symbol | |
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| ID | 4172205 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1776910 |
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| End bp | 1778637 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638054489 |
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| Product | 2-isopropylmalate synthase |
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| Protein accession | YP_661056 |
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| Protein GI | 109897801 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
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| TIGRFAM ID | [TIGR00970] 2-isopropylmalate synthase, yeast type |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCAGCC AACCACATAC CAAATATCAA CGCTTTGAAG GGGTTAGCTT ACCTGATCGC
CAATGGCCGA ATAAACACAT TACTCATGCT CCTGTCTGGA TGAGCACCGA CTTGCGCGAC
GGCAATCAAG CGCTGATAGA TCCCATGTCG ATTGACACGA AATTGCGCTT TTTTAAAGAA
TTAGTCGCTA TTGGCTTTAA ACAAATTGAA GTGGGCTTTC CGTCAGCGTC AGACATTGAT
TTTAATTTTG TGCGCTTACT GATCGAAAAA AATCACATCC CAGATGACGT CACTATTGAA
GTGCTAGTTC AAGCACGCTT TGACTTAATC GAGCGCACAG TAGAAAGCTT ACGCGGTGCG
AAGCAAGCTA TATTGCATAT GTACAATCCT GTCGCCCCTG CCTTTCGCGA TATTGTGTAT
AAAACCGATA AAGCCGGTGT AAAGCATATT GCCACCCAAG GCACAGCGTG GGTGAAGGAA
TTGACTGCCC AAGCAACAGA GGTAAATTGG ACGTATCAAT ACTCGCCCGA GGTGTTTTCT
AGCACCGAAA TTGAGTTTGC CAAAGACGTA TGTGATGCAG TAGTAGAGGT GTGGCAGCCA
AGTGCCGACA ACAAAATTAT CATTAATTTG CCAGCCACCG TTGAGATGAA CACCCCGAAT
ACCTACGCAG ACCAAATAGA ATGGATGCAT CGTCATCTTA ACCGCCGAGA GCATATTGTA
TTGAGTGTGC ACCCACATAA TGATCGCGGC ACAGCCGTGG CAGCAGCAGA GCTAGCCGTG
ATGGCAGGTG CCGACCGAGT TGAAGGCTGC TTGTTTGGCA ATGGTGAGCG TACGGGCAAC
GTGGATTTAG TCACCCTTGC AATCAACCTA TACACCCAAG GTGTTAACCC GGAGTTGGAT
TTTTCGAATA TCGATAGAGT GCGCAACTTA GTGGAAGAAT GTAACCAGTT GCCTGTGCAC
CCTCGCCACC CTTATGCCGG GGAGTTAGTC TTTACCGCCT TTTCAGGCTC TCACCAAGAC
GCGATTAAAA AAGGCTTGGC GGTACAAAAA GAAGATACCC TATGGCAAGT GCCTTATTTA
CCAATTGATC CCGCTGATTT AGGCCGCAGC TACGATGCTG TTGTGAGAGT AAACAGCCAG
TCAGGAAAAG GGGGCGTGAG CTTCTTACTT GAACGCGAAG GGGGTTTGCA GTTACCGCGT
AAATTACAGA TTGAATTCAG TAAAATCGTA CAGCAACACA ATGACACCAG CGGTAAGGAA
ATGAGCGCTT CGGGTATTGT GTCGCTTTTT GAATCAACAT ATTTGATTCA ACCCGATTGG
ATTGAGTTTA AACAGTGCCA AATTAAAACC GTTGAACAAA ACCAACAGCA AATCGACATT
CAGCTGATTA TTAACAACGC TGAGGTGAAT ATTAGCGGTG TGGGTAATGG GCCAATCGAT
GCGGCGTCCC GCGCGATGAG TCAATTGATA AAAACGCCAC TTGAGATTGT TGATTACCAT
GAGCACGCAA TTGGCGAGGG CTCTGGGGTC ACCGCTGTAT GTTACTTAGA ATTAAGAACG
GGTGACACCA CAACTCGTTT CGGTGTCGCC AAAGACAGCA ATATTATGAC CGCGGCTGTC
AAAGCGATGC TAAGCGGTAT TAATAGAAGC GAGCAACAAG AAAGCATCCA AACCGCGGTT
GCCAAGGCTT ACACATTTGA CCTAAAGCAA GCCGTTTGCT CTGCTTAG
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| Protein sequence | MISQPHTKYQ RFEGVSLPDR QWPNKHITHA PVWMSTDLRD GNQALIDPMS IDTKLRFFKE
LVAIGFKQIE VGFPSASDID FNFVRLLIEK NHIPDDVTIE VLVQARFDLI ERTVESLRGA
KQAILHMYNP VAPAFRDIVY KTDKAGVKHI ATQGTAWVKE LTAQATEVNW TYQYSPEVFS
STEIEFAKDV CDAVVEVWQP SADNKIIINL PATVEMNTPN TYADQIEWMH RHLNRREHIV
LSVHPHNDRG TAVAAAELAV MAGADRVEGC LFGNGERTGN VDLVTLAINL YTQGVNPELD
FSNIDRVRNL VEECNQLPVH PRHPYAGELV FTAFSGSHQD AIKKGLAVQK EDTLWQVPYL
PIDPADLGRS YDAVVRVNSQ SGKGGVSFLL EREGGLQLPR KLQIEFSKIV QQHNDTSGKE
MSASGIVSLF ESTYLIQPDW IEFKQCQIKT VEQNQQQIDI QLIINNAEVN ISGVGNGPID
AASRAMSQLI KTPLEIVDYH EHAIGEGSGV TAVCYLELRT GDTTTRFGVA KDSNIMTAAV
KAMLSGINRS EQQESIQTAV AKAYTFDLKQ AVCSA
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