| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1419 |
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| Symbol | prpB |
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| ID | 4173559 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1702016 |
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| End bp | 1702894 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638054429 |
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| Product | 2-methylisocitrate lyase |
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| Protein accession | YP_660996 |
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| Protein GI | 109897741 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
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| TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCCAG GTCAAAAATT CCGCCAAGCC TTAGCCGATA ATAAACCGCT GCAAATCGTT
GGGGCGATCA ACGCGTATTC CGCCATGATG GCCAAGAAAA TTGGCCACAA AGCCATTTAC
TTATCAGGTG GCGGTGTGGC GAATGCTTCT TACGGGTTAC CGGATCTAGG CATGACGTCA
CTAAACGACG TGATTGTCGA CGTGCAGCGT ATTACCTCGG CCTGTGACTT ACCGCTGTTA
GTGGATATCG ACACGGGGTG GGGCGGTGCA TTTAATATTG CCAAAACCAT TCGCGATATG
GAAAAGGCGG GTGCTGCTGC GGTACATATG GAAGACCAAG TGGCCCAAAA GCGCTGTGGT
CATCGCCCGA ACAAGGAAAT TGTACCATTA GAGGAAATGG TTGACCGGAT CAAAGCGGCG
GTTGATGCGC GCACCGACCC TGACTTTTTC ATCATGGCCC GCACTGACTC GTTCGCGCAA
GAAGGTTTAG ACGCCGCCAT TGCCCGCGCT AAAGCATATG TTGCTGCCGG TGCCGACGGT
ATATTCGCAG AAGCGATTAA AACAGAAGAG CACTACCGCG CCTTCGCCGA GGCCTTAGAT
GTGCCGATTT TGGCGAATAT TACTGAGTTT GGCCAAACCG AATTATGGAA CAAAAAAGTG
CTAGGTGAAT GGGGCGCAGC GATGGTGCTT TACCCATTAA GTGCATTTCG CGCCATGAAC
AAAGCGGCCG AAAACGTGTA CAACGCGATT TTAGAGCAGG GGGATCAAAC CTCTGTGGTC
GATACCATGC AAACACGCAT GGAGCTTTAC GATTACCTGA ATTATCACGA TTACGAACAA
AAGCTCGACA GTCTTTTTGC CCAAGGCAAA AACAAGTAA
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| Protein sequence | MSPGQKFRQA LADNKPLQIV GAINAYSAMM AKKIGHKAIY LSGGGVANAS YGLPDLGMTS
LNDVIVDVQR ITSACDLPLL VDIDTGWGGA FNIAKTIRDM EKAGAAAVHM EDQVAQKRCG
HRPNKEIVPL EEMVDRIKAA VDARTDPDFF IMARTDSFAQ EGLDAAIARA KAYVAAGADG
IFAEAIKTEE HYRAFAEALD VPILANITEF GQTELWNKKV LGEWGAAMVL YPLSAFRAMN
KAAENVYNAI LEQGDQTSVV DTMQTRMELY DYLNYHDYEQ KLDSLFAQGK NK
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