Gene Patl_1310 details

Gene Information

• Locus tag: Patl_1310
• Symbol: nrdR
• ID: 4173358
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 1578376
• End bp: 1578825
• Gene Length: 450 bp
• Protein Length: 149 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 638054317
• Product: transcriptional regulator NrdR
• Protein accession: YP_660890
• Protein GI: 109897635
• COG category: [K] Transcription
• COG ID: [COG1327] Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains
• TIGRFAM ID: [TIGR00244] transcriptional regulator NrdR

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTTGTC CCTTCTGTTC TATCCAAGAA ACCAAGGTGA TTGACTCTCG CTTAGTGGCT 
GACGGGCACC AAGTGCGCCG CCGTCGTGAA TGTACTATGT GTAAAGAGCG TTTCACTACC 
TTTGAAATGG CTGAATTGGT GATGCCTCGC GTGGTTAAAC GTGATGGCTC TCGTGAGCCG 
TTTAACGAAG ATAAGTTGCG GGCAGGTTTA CAGCGTGCCC TTGAAAAACG CCCCGTGAGT 
ACCGAGCAAG TGGAGCAGTG TATCAGTCGT CTTAAATCGG CTATGCGTGC CACAGGCGAG 
CGTGAGATCA CTAGTGAATA CTTGGGCAAT CTAATTATGG ACGCTCTCAA AGAGCTGGAT 
AAAGTGGCCT ATGTACGCTT TGCTTCTGTG TATCGCTCGT TCGAAGATAT TCGCGAATTT 
GGCGAAGAAA TCGCACGTTT GGGTGACTAA 

 

Protein sequence

MFCPFCSIQE TKVIDSRLVA DGHQVRRRRE CTMCKERFTT FEMAELVMPR VVKRDGSREP 
FNEDKLRAGL QRALEKRPVS TEQVEQCISR LKSAMRATGE REITSEYLGN LIMDALKELD 
KVAYVRFASV YRSFEDIREF GEEIARLGD